SMTL ID : 4zrd.1

Crystal structure of SMG1 F278N mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 9 residues within 4Å: Chain A: G.233, N.234, N.259, D.260, D.261, Q.263, G.264, I.265, Q.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.263

1 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 1 residues within 4Å: Chain A: T.13 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: G.81, N.83, S.86, L.87, S.152, L.153, N.259 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.81, A:F.85, A:L.87, A:S.152, A:N.259, A:N.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, S. et al., Structure of product-bound SMG1 lipase: active site gating implications. Febs J. (2015)

Release Date

2015-09-23

Peptides

LIP1, secretory lipase (Family 3): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LIP1, secretory lipase (Family 3)