SMTL ID : 4zsx.1

Structure of a fusion protein with a helix linker, 2ARH-3-3KAW-2.0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-hexamer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.96 Chain C: F.138, I.139, P.140, H.148 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Water bridges: C:E.141, A:R.96 Salt bridges: C:H.148, A:R.96 PO4.2: 8 residues within 4Å: Chain A: K.51, E.65, E.145, G.146, K.149 Chain C: L.143, E.145 Chain E: R.31 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:E.65 Water bridges: A:K.51 Salt bridges: A:K.149, E:R.31 PO4.3: 4 residues within 4Å: Chain B: F.138, P.140, H.148 Chain D: R.96 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Salt bridges: D:R.96, B:H.148 PO4.4: 8 residues within 4Å: Chain B: R.74, N.75, F.78, E.103, D.104, K.105, E.106, R.121 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:F.78, B:D.104, B:D.104, B:K.105, B:E.106, B:E.106 PO4.5: 5 residues within 4Å: Chain C: R.96 Chain E: F.138, I.139, P.140, H.148 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain C Water bridges: E:E.141, C:R.96 Salt bridges: E:H.148, C:R.96 PO4.6: 8 residues within 4Å: Chain A: R.31 Chain C: K.51, E.65, E.145, G.146, K.149 Chain E: L.143, E.145 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.65 Water bridges: C:K.51 Salt bridges: C:K.149, A:R.31 PO4.7: 4 residues within 4Å: Chain D: F.138, P.140, H.148 Chain F: R.96 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D Salt bridges: F:R.96, D:H.148 PO4.8: 8 residues within 4Å: Chain D: R.74, N.75, F.78, E.103, D.104, K.105, E.106, R.121 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:F.78, D:D.104, D:D.104, D:K.105, D:E.106, D:E.106 PO4.9: 5 residues within 4Å: Chain A: F.138, I.139, P.140, H.148 Chain E: R.96 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain E Water bridges: A:E.141, E:R.96 Salt bridges: A:H.148, E:R.96 PO4.10: 8 residues within 4Å: Chain A: L.143, E.145 Chain C: R.31 Chain E: K.51, E.65, E.145, G.146, K.149 4 PLIP interactions: 3 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:E.65 Water bridges: E:K.51 Salt bridges: E:K.149, C:R.31 PO4.11: 4 residues within 4Å: Chain B: R.96 Chain F: F.138, P.140, H.148 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain B Salt bridges: F:H.148, B:R.96 PO4.12: 8 residues within 4Å: Chain F: R.74, N.75, F.78, E.103, D.104, K.105, E.106, R.121 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:F.78, F:D.104, F:D.104, F:K.105, F:E.106, F:E.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, Y.T. et al., On the predictability of the orientation of protein domains joined by a spanning alpha-helical linker. Protein Eng.Des.Sel. (2015)

Release Date

2015-08-19

Peptides

Uncharacterized Fusion Protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Uncharacterized Fusion Protein