SMTL ID : 4zu3.2 (1 other biounit)

Halohydrin hydrogen-halide-lyases, HheB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x 4SD: 3-hydroxypentanedinitrile(Non-covalent)

4SD.1: 16 residues within 4Å: Chain A: Y.19, F.71, G.117, S.118, A.119, A.120, Q.125, Y.131, R.135, Q.161, H.162, W.163, T.164, N.166, Y.169, F.170 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Q.161, A:Y.169, A:F.170 Hydrogen bonds: A:S.118, A:Y.131, A:Q.161, A:T.164, A:N.166 4SD.3: 16 residues within 4Å: Chain B: Y.19, F.71, G.117, S.118, A.119, A.120, Q.125, Y.131, R.135, Q.161, H.162, W.163, T.164, N.166, Y.169, F.170 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.169, B:F.170 Hydrogen bonds: B:S.118, B:Y.131, B:Q.161, B:N.166 4SD.4: 16 residues within 4Å: Chain C: Y.19, F.71, G.117, S.118, A.119, A.120, Q.125, Y.131, R.135, Q.161, H.162, W.163, T.164, N.166, Y.169, F.170 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:Q.161, C:Y.169, C:F.170 Hydrogen bonds: C:S.118, C:Y.131, C:Q.161, C:T.164, C:N.166 4SD.6: 16 residues within 4Å: Chain D: Y.19, F.71, G.117, S.118, A.119, A.120, Q.125, Y.131, R.135, Q.161, H.162, W.163, T.164, N.166, Y.169, F.170 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:Y.169, D:F.170 Hydrogen bonds: D:S.118, D:Y.131, D:Q.161, D:N.166

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: R.54 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:R.54, H2O.1, H2O.3 MG.5: 1 residues within 4Å: Chain C: R.54 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:R.54, H2O.13, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, F. et al., Crystal structures of halohydrin hydrogen-halide-lyases from Corynebacterium sp. N-1074. Proteins (2015)

Release Date

2015-11-04

Peptides

Halohydrin epoxidase B: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
E

D
F

Halohydrin epoxidase B

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