SMTL ID : 4zwl.2 (1 other biounit)

2.60 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) H448F/Y450L double mutant from Staphylococcus aureus in complex with NAD+ and BME-free Cys289

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 29 residues within 4Å: Chain A: I.174, T.175, P.176, W.177, N.178, Q.183, K.201, P.202, S.203, E.204, G.234, S.235, G.238, D.239, F.252, T.253, G.254, G.255, T.258, H.261, I.262, E.276, L.277, G.278, C.310, E.411, F.413, L.439, W.477 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:T.253 Hydrogen bonds: A:T.175, A:W.177, A:K.201, A:E.204, A:G.234, A:D.239, A:G.255, A:T.258, A:T.258, A:E.276, A:L.277, A:E.411 Water bridges: A:S.203, A:D.239, A:D.239 NAD.4: 27 residues within 4Å: Chain B: I.174, T.175, P.176, W.177, N.178, Q.183, K.201, P.202, S.203, E.204, G.234, G.238, D.239, F.252, T.253, G.254, G.255, T.258, H.261, I.262, E.276, L.277, G.278, C.310, E.411, F.413, W.477 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.253 Hydrogen bonds: B:T.175, B:T.175, B:W.177, B:K.201, B:E.204, B:G.234, B:D.239, B:G.255, B:T.258, B:L.277, B:E.411 Water bridges: B:Q.183 NAD.8: 28 residues within 4Å: Chain C: I.174, T.175, P.176, W.177, N.178, Q.183, K.201, P.202, S.203, E.204, G.234, G.238, D.239, F.252, T.253, G.254, G.255, T.258, H.261, I.262, E.276, L.277, G.278, C.310, E.411, F.413, L.439, W.477 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:T.253 Hydrogen bonds: C:T.175, C:W.177, C:K.201, C:E.204, C:G.234, C:D.239, C:G.255, C:T.258, C:T.258, C:E.276, C:L.277, C:E.411 Water bridges: C:D.239, C:D.239, C:T.258 NAD.12: 28 residues within 4Å: Chain D: I.174, T.175, P.176, W.177, N.178, Q.183, K.201, P.202, S.203, E.204, G.234, G.238, D.239, F.252, T.253, G.254, G.255, T.258, H.261, I.262, E.276, L.277, G.278, C.310, E.411, F.413, L.439, W.477 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:T.253 Hydrogen bonds: D:T.175, D:W.177, D:K.201, D:E.204, D:G.234, D:D.239, D:G.255, D:T.258, D:L.277, D:E.411 Water bridges: D:T.258

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: F.286, Q.319, T.424, E.425, K.450 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.319, A:E.425, A:E.425 Water bridges: A:D.287 Salt bridges: A:K.450 SO4.3: 2 residues within 4Å: Chain A: N.359, R.381 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.381 SO4.5: 2 residues within 4Å: Chain B: K.264 Chain C: K.264 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Salt bridges: C:K.264, B:K.264 SO4.6: 2 residues within 4Å: Chain B: N.359, R.381 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.359 Water bridges: B:R.358, B:R.358 Salt bridges: B:R.381 SO4.7: 1 residues within 4Å: Chain B: R.31 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.31 SO4.9: 4 residues within 4Å: Chain C: T.355, R.358, N.359, R.381 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.358, C:R.381 SO4.10: 1 residues within 4Å: Chain C: K.335 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.335 SO4.11: 1 residues within 4Å: Chain C: R.406 3 PLIP interactions: 3 interactions with chain C Water bridges: C:R.406, C:R.406 Salt bridges: C:R.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halavaty, A.S. et al., 2.60 Angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betB) H448F/Y450L double mutant from Staphylococcus aureus in complex with NAD+ and BME-free Cys289. To be Published

Release Date

2015-05-27

Peptides

Betaine-aldehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Betaine-aldehyde dehydrogenase

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