- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- monomer
- Ligands
- 1 x PRO- SER- THR- ALA: NAG-PRO-SER-THR-ALA-Thr-O-GlcNAc containing peptide from drosophila HCF(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 15 x CD: CADMIUM ION(Non-covalent)
CD.3: 1 residues within 4Å:- Chain A: D.20
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.20, H2O.3
CD.4: 3 residues within 4Å:- Chain A: E.13, N.412, D.414
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.13, A:E.13, A:D.414, H2O.2
CD.5: 3 residues within 4Å:- Chain A: N.100, D.101, E.132
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.132, A:E.132
CD.6: 4 residues within 4Å:- Chain A: L.30, V.31, E.33, E.34
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:L.30, A:E.33, A:E.33, H2O.2, H2O.2
CD.7: 3 residues within 4Å:- Chain A: E.35, E.70, D.73
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.35, A:E.70, A:D.73, H2O.1, H2O.3
CD.8: 2 residues within 4Å:- Chain A: D.79, E.107
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.79, A:E.107, H2O.2, H2O.3
CD.9: 2 residues within 4Å:- Chain A: N.100, D.101
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.101, A:D.101
CD.10: 2 residues within 4Å:- Chain A: D.112, D.214
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.214
CD.11: 2 residues within 4Å:- Chain A: E.234, H.238
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.234, A:H.238
CD.12: 2 residues within 4Å:- Chain A: E.244, D.248
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.244, A:D.248, A:D.248, H2O.1
CD.13: 2 residues within 4Å:- Chain A: E.324, D.386
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.324, A:E.324, A:D.386, A:D.386
CD.14: 1 residues within 4Å:- Chain A: H.375
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.375, H2O.3
CD.15: 1 residues within 4Å:- Chain A: E.512
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.512
CD.16: 2 residues within 4Å:- Chain A: E.507, E.511
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.511, A:E.511
CD.17: 3 residues within 4Å:- Chain A: D.436, R.493, E.496
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.436, A:D.436, A:E.496, A:E.496
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mariappa, D. et al., A mutant O-GlcNAcase as a probe to reveal global dynamics of protein O-GlcNAcylation during Drosophila embryonic development. Biochem.J. (2015)
- Release Date
- 2015-09-23
- Peptides
- O-GlcNAcase NagJ: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- monomer
- Ligands
- 1 x PRO- SER- THR- ALA: NAG-PRO-SER-THR-ALA-Thr-O-GlcNAc containing peptide from drosophila HCF(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
- 15 x CD: CADMIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mariappa, D. et al., A mutant O-GlcNAcase as a probe to reveal global dynamics of protein O-GlcNAcylation during Drosophila embryonic development. Biochem.J. (2015)
- Release Date
- 2015-09-23
- Peptides
- O-GlcNAcase NagJ: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A