SMTL ID : 5a02.1 (2 other biounits)

Crystal structure of aldose-aldose oxidoreductase from Caulobacter crescentus complexed with glycerol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: G.13, L.14, G.15, Y.16, Y.17, S.39, G.40, T.41, K.44, Y.62, I.80, T.81, P.82, N.83, L.85, H.86, E.103, K.104, P.105, G.130, R.132, W.171, R.172, L.177, Y.189, Y.267 Ligands: GOL.3 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:Y.17 Hydrogen bonds: A:L.14, A:Y.16, A:Y.17, A:G.40, A:Y.62, A:Y.62, A:T.81, A:E.103, A:K.104, A:R.132, A:D.185, A:D.185 Water bridges: A:G.15, A:A.18, A:T.41, A:K.44, A:K.44, A:Y.78, A:R.132, A:R.172, A:R.172, A:R.172 Salt bridges: A:K.44, A:R.172 pi-Stacking: A:Y.17 NAP.4: 28 residues within 4Å: Chain B: G.13, L.14, G.15, Y.16, Y.17, S.39, G.40, T.41, K.44, Y.62, I.80, T.81, P.82, N.83, L.85, H.86, E.103, K.104, P.105, G.130, R.132, W.171, R.172, L.177, D.185, Y.189, Y.267 Ligands: GOL.5 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:Y.17 Hydrogen bonds: B:L.14, B:Y.16, B:Y.17, B:G.40, B:T.41, B:T.41, B:Y.62, B:T.81, B:E.103, B:K.104, B:R.132, B:D.185, B:Y.189 Water bridges: B:G.15, B:A.18, B:Y.78, B:R.132, B:R.172, B:R.172 Salt bridges: B:K.44, B:R.172 pi-Stacking: B:Y.17

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: H.138, Q.270, A.271, M.272, P.282, R.283, E.284 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.138, A:M.272, A:R.283 Water bridges: A:H.138, A:Q.270 GOL.3: 6 residues within 4Å: Chain A: K.104, F.163, R.172, D.185, Y.189 Ligands: NAP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.104, A:R.172, A:Y.189, A:Y.189 Water bridges: A:R.172 GOL.5: 6 residues within 4Å: Chain B: K.104, F.163, R.172, D.185, Y.189 Ligands: NAP.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.172, B:R.172, B:Y.189 Water bridges: B:R.172 GOL.6: 7 residues within 4Å: Chain A: R.155, P.255 Chain B: D.212, D.215, R.217, D.223, S.244 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.212, B:D.212, B:D.215, B:R.217, B:S.244, B:S.244 Water bridges: B:R.217 GOL.7: 6 residues within 4Å: Chain A: R.251, W.258, E.260, R.273 Chain B: D.262, P.263 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.260, A:R.273, A:R.273 Water bridges: A:R.251, B:N.248

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain B: E.28, K.290, N.291 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.291, B:N.291 Water bridges: B:P.289 SO4.9: 4 residues within 4Å: Chain B: I.165, G.166, D.167, Q.170 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.166, B:D.167, B:Q.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taberman, H. et al., Structure and Function of Caulobacter Crescentus Aldose-Aldose Oxidoreductase. Biochem.J. (2015)

Release Date

2015-10-21

Peptides

ALDOSE-ALDOSE OXIDOREDUCTASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

ALDOSE-ALDOSE OXIDOREDUCTASE

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