SMTL ID : 5a07.2 (1 other biounit)

X-ray structure of the mannosyltransferase Ktr4p from S. cerevisiae in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: L.110, V.111, R.112, D.115, N.142, D.143, W.174, Y.199, S.204, Y.205, M.208, E.232, P.233, H.381 Ligands: MN.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:V.111, A:R.112, A:D.143, A:Y.205 Water bridges: A:L.110, A:L.110, A:R.112, A:R.112, A:N.142, A:D.143, A:D.143, A:W.174, A:Y.199, A:S.204, A:S.204 Salt bridges: A:D.143, A:H.381 pi-Cation interactions: A:R.112

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain A: E.232, H.381 Ligands: GDP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.232, A:H.381, H2O.7, H2O.10

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 8 residues within 4Å: Chain A: L.53, H.54, E.55, P.56, K.297, Y.306, Q.310, G.311 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.53 Water bridges: A:K.297 Salt bridges: A:K.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Possner, D.D.D. et al., Structure of the Glycosyltransferase Ktr4P from Saccharomyces Cerevisiae. Plos One (2015)

Release Date

2015-08-26

Peptides

PROBABLE MANNOSYLTRANSFERASE KTR4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROBABLE MANNOSYLTRANSFERASE KTR4

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