This entry has been superseded by
6OH6
on April 17, 2019, midnight.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.36 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PPV: PYROPHOSPHATE(Non-covalent)
PPV.4: 12 residues within 4Å:- Chain A: D.90, E.95, R.184, T.187, N.230, S.234, R.237, R.316, Y.317
- Ligands: MG.1, MG.2, MG.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.234, A:Y.317
- Salt bridges: A:R.184, A:R.237, A:R.316
PPV.12: 12 residues within 4Å:- Chain B: D.90, E.95, R.184, T.187, N.230, S.234, R.237, R.316, Y.317
- Ligands: MG.9, MG.10, MG.11
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.234
- Salt bridges: B:R.184, B:R.237, B:R.316
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: L.116, A.117, G.118, H.149, A.152, R.156
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.117, A:R.156, A:R.156
GOL.6: 6 residues within 4Å:- Chain A: W.40, E.43, H.44, D.134, L.135, R.138
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.40, A:D.134, A:R.138
GOL.7: 5 residues within 4Å:- Chain A: L.181, A.182, T.220, N.224
- Ligands: GOL.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.181, A:N.224
GOL.8: 7 residues within 4Å:- Chain A: N.217, T.220, A.221, N.224, E.275, V.278
- Ligands: GOL.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.217, A:A.221, A:N.224
GOL.13: 6 residues within 4Å:- Chain B: L.116, A.117, G.118, H.149, A.152, R.156
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.117, B:R.156, B:R.156
GOL.14: 6 residues within 4Å:- Chain B: W.40, E.43, H.44, D.134, L.135, R.138
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:W.40, B:R.138
GOL.15: 5 residues within 4Å:- Chain B: L.181, A.182, T.220, N.224
- Ligands: GOL.16
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.181, B:N.224
GOL.16: 7 residues within 4Å:- Chain B: N.217, T.220, A.221, N.224, E.275, V.278
- Ligands: GOL.15
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.217, B:A.221, B:N.224
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Centeno-Leija, S. et al., Crystallographic Structure of a Bacterial Class I Labdane-Related Diterpene Synthase. To be Published
- Release Date
- 2016-03-23
- Peptides
- LABDANE-RELATED DITERPENE SYNTHASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A