SMTL ID : 5a1l.2 (1 other biounit)

Crystal structure of JmjC domain of human histone demethylase UTY with S21056a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.217, E.219, H.297 Ligands: S2I.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.217, A:E.219, H2O.1, H2O.1

1 x S2I: 3-[[2-pyridin-2-yl-6-(1,2,4,5-tetrahydro-3-benzazepin-3-yl)pyrimidin-4-yl]amino]propan-1-ol(Non-covalent)

S2I.2: 18 residues within 4Å: Chain A: R.72, Q.74, S.96, F.155, T.157, N.158, Y.206, K.208, R.213, T.214, P.215, H.217, E.219, N.220, N.227, S.263, N.307 Ligands: FE2.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.72, A:F.155, A:Y.206, A:T.214 Hydrogen bonds: A:K.208, A:N.227, A:N.307 Water bridges: A:N.158, A:Y.206, A:Y.206, A:S.225, A:S.225

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: G.43, R.284, D.287 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.43, A:D.287 EDO.4: 6 residues within 4Å: Chain A: I.91, W.92, R.93, F.251, N.255, L.257 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.92, A:R.93

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: C.402, C.405, C.429, C.432 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.402, A:C.405, A:C.429, A:C.432

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srikannathasan, V. et al., Crystal Structure of Jmjc Domain of Human Histone Demethylase Uty with S21056A. To be Published

Release Date

2015-06-17

Peptides

UBIQUITOUSLY TRANSCRIBED TETRATRICOPEPTIDE REPEAT PROTEIN Y-LINKED TRANSCRIPT VARIANT 57: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UBIQUITOUSLY TRANSCRIBED TETRATRICOPEPTIDE REPEAT PROTEIN Y-LINKED TRANSCRIPT VARIANT 57

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