SMTL ID : 5a28.1

Leishmania major N-myristoyltransferase in complex with a chlorophenyl inhibitor (compound 13).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 33 residues within 4Å: Chain A: H.2, A.3, F.4, W.5, N.69, Y.70, V.71, I.156, N.157, F.158, L.159, C.160, V.161, R.166, E.167, K.168, R.169, L.170, A.171, P.172, I.175, T.179, V.182, N.183, V.187, W.188, Q.189, A.190, Y.192, T.193, L.198, Y.394 Ligands: MG.3 39 PLIP interactions: 39 interactions with chain A Hydrophobic interactions: A:W.5, A:W.5, A:Y.70, A:V.71, A:I.156, A:I.156, A:L.159, A:L.159, A:L.159, A:V.161, A:I.175, A:I.175, A:T.179, A:V.182, A:A.190, A:Y.192, A:Y.192, A:Y.394, A:Y.394 Hydrogen bonds: A:A.3, A:F.4, A:W.5, A:Y.70, A:F.158, A:L.159, A:L.159, A:V.161, A:R.166, A:R.166, A:E.167, A:R.169, A:L.170, A:A.171 Water bridges: A:H.2, A:R.169, A:R.169 Salt bridges: A:H.2, A:R.169, A:R.169

1 x TUQ: 4-(4-CHLORO-2-{5-[(TRIMETHYL-1H-PYRAZOL-4-YL)METHYL]-1,3,4-OXADIAZOL-2-YL}PHENOXY)PIPERIDINE

TUQ.2: 18 residues within 4Å: Chain A: V.71, D.73, F.78, R.79, F.80, Y.82, Y.207, F.208, H.209, I.318, S.320, L.331, Y.335, N.366, M.367, V.368, M.410, L.411 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:D.73, A:F.80, A:F.80, A:Y.207, A:Y.207, A:I.318, A:V.368 Hydrogen bonds: A:Y.82, A:S.320, A:L.411 Water bridges: A:N.157 pi-Stacking: A:Y.335 Halogen bonds: A:F.208

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 7 residues within 4Å: Chain A: L.165, R.166, E.167, K.168, R.169, L.170 Ligands: MYA.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rackham, M.D. et al., Discovery of High Affinity Inhibitors of Leishmania Donovani N-Myristoyltransferase. Medchemcomm (2015)

Release Date

2016-03-23

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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