SMTL ID : 5a30.1

Crystal structure of mtPAP N472D mutant in complex with ATPgammaS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.213, D.224, D.226 Ligands: AGS.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.226, H2O.1 MG.4: 4 residues within 4Å: Chain B: S.213, D.224, D.226 Ligands: AGS.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.213, B:D.224, B:D.226, H2O.1

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 11 residues within 4Å: Chain A: F.211, G.212, S.213, D.226, A.314, S.318, N.358, F.359, D.459, I.467 Ligands: MG.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.213, A:S.213, A:S.213, A:S.318, A:N.358, A:I.467 AGS.3: 11 residues within 4Å: Chain B: F.211, G.212, S.213, D.224, D.226, A.314, N.358, F.359, D.459, I.467 Ligands: MG.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.213, B:S.213, B:N.358, B:I.467 Water bridges: B:G.212, B:A.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lapkouski, M. et al., Structure of Mitochondrial Poly(A) RNA Polymerase Reveals the Structural Basis for Dimerization, ATP Selectivity and the Spax4 Disease Phenotype. Nucleic Acids Res. (2015)

Release Date

2015-09-09

Peptides

MITOCHONDRIAL PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MITOCHONDRIAL PROTEIN