SMTL ID : 5a6w.1

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikD with the HMA domain of Pikp1 from rice (Oryza sativa)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-1-mer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain B: V.9, K.45, L.72, Q.73 Chain C: W.36 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.45 Water bridges: B:E.47, B:Q.73 EDO.3: 4 residues within 4Å: Chain B: I.56, L.71, V.74 Chain C: W.64 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain C: I.13, N.42, G.82, I.84 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.42 Water bridges: C:N.41, C:N.42, C:N.42 EDO.5: 5 residues within 4Å: Chain B: V.74 Chain C: K.55, M.56, D.57, H.66 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.66

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain C: S.53, D.70, D.71 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maqbool, A. et al., Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor. Elife (2015)

Release Date

2015-08-26

Peptides

RESISTANCE PROTEIN PIKP-1: AB
AVR-PIK PROTEIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

RESISTANCE PROTEIN PIKP-1

AVR-PIK PROTEIN

Related Entries With Identical Sequence