SMTL ID : 5a8j.1

Crystal structure of vWA2 from Sulfolobus acidocaldarius

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: R.144, Y.145, S.146, N.170, A.172, I.173, S.311 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.144, A:S.146, A:N.170, A:S.311 Water bridges: A:S.146, A:S.146, A:A.172 SO4.10: 7 residues within 4Å: Chain B: R.144, Y.145, S.146, N.170, A.172, I.173, S.311 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.144, B:S.146, B:N.170, B:S.311 Water bridges: B:S.146, B:S.146, B:A.172

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: S.38, G.39, I.40, E.127, I.128, P.129, Y.209, N.210, V.261, N.266 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.38, A:Y.209, A:N.266, A:N.266 Water bridges: A:E.127, A:N.210 GOL.3: 8 residues within 4Å: Chain A: D.179, I.222, N.223, Y.224, E.225, R.304, M.359, R.360 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.225 Water bridges: A:K.175, A:D.179, A:K.180, A:R.304, A:R.360 GOL.4: 4 residues within 4Å: Chain A: R.67, P.195, T.196, V.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.67, A:T.196 GOL.5: 1 residues within 4Å: Chain A: K.267 No protein-ligand interaction detected (PLIP) GOL.11: 10 residues within 4Å: Chain B: S.38, G.39, I.40, E.127, I.128, P.129, Y.209, N.210, V.261, N.266 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.38, B:Y.209, B:N.266, B:N.266 Water bridges: B:E.127, B:N.210 GOL.12: 8 residues within 4Å: Chain B: D.179, I.222, N.223, Y.224, E.225, R.304, M.359, R.360 5 PLIP interactions: 5 interactions with chain B Water bridges: B:K.175, B:D.179, B:K.180, B:R.304, B:R.360 GOL.13: 4 residues within 4Å: Chain B: R.67, P.195, T.196, V.199 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.67, B:T.196 GOL.14: 1 residues within 4Å: Chain B: K.267 No protein-ligand interaction detected (PLIP)

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: K.97, Q.98 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: R.286 Ligands: CL.18 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain B: K.97, Q.98 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain A: R.286 Ligands: CL.9 Ligand excluded by PLIP

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.7: 9 residues within 4Å: Chain A: F.16, K.19, R.286, F.289 Chain B: F.16, K.19, R.286, F.289 Ligands: CIT.16 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Water bridges: A:K.19, A:K.19, A:K.19, B:K.19, B:K.19 Salt bridges: A:K.19, A:R.286, B:K.19, B:K.19, B:R.286 Hydrophobic interactions: B:F.16 CIT.16: 9 residues within 4Å: Chain A: F.16, K.19, R.286, F.289 Chain B: F.16, K.19, R.286, F.289 Ligands: CIT.7 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.16 Water bridges: A:K.19, A:K.19, B:K.19, B:K.19, B:K.19 Salt bridges: A:K.19, A:K.19, A:R.286, B:K.19, B:R.286

2 x NA: SODIUM ION(Non-functional Binders)

NA.8: 3 residues within 4Å: Chain A: E.167, D.347, K.349 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.347 Water bridges: A:N.189 NA.17: 3 residues within 4Å: Chain B: E.167, D.347, K.349 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.347 Water bridges: B:E.167, B:N.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoffmann, L. et al., Phosphorylation-Dependent Interaction between an Archaeal Von Willebrand and Fha Domain Recruits Arna-Arnb Complex to DNA for Repression of Motility. To be Published

Release Date

2016-06-22

Peptides

VWA2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

VWA2