SMTL ID : 5aan.1

Crystal structure of Drosophila NCS-1 bound to penothiazine FD44

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: D.73, N.75, D.77, A.79, I.80, E.81, E.84 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.73, A:D.77, A:A.79, A:E.84, H2O.4 CA.2: 6 residues within 4Å: Chain A: D.156, N.158, D.160, R.162, L.163, E.167 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.156, A:D.160, A:R.162, A:E.167, H2O.5 CA.3: 7 residues within 4Å: Chain A: D.109, D.111, D.113, Y.115, I.116, T.117, E.120 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.109, A:D.111, A:Y.115, A:E.120, H2O.5

1 x XOC: N-phenothiazin-10-yl-2-piperidin-1-yl-ethanamide(Non-covalent)

XOC.4: 15 residues within 4Å: Chain A: W.30, F.48, I.51, Y.52, F.55, F.64, V.68, F.72, F.85, L.89, T.92, W.103, L.182, S.183, L.184 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:Y.52, A:Y.52, A:F.85, A:F.85, A:L.89, A:W.103

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.5: 7 residues within 4Å: Chain A: V.125, I.128, R.147, I.151, R.177, M.178, A.181 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.129, A:R.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mansilla, A. et al., Interference of the complex between NCS-1 and Ric8a with phenothiazines regulates synaptic function and is an approach for fragile X syndrome. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-01-25

Peptides

CG5907-PA, ISOFORM A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CG5907-PA, ISOFORM A

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