SMTL ID : 5acu.1

VIM-2-NAT, Discovery of novel inhibitor scaffolds against the metallo- beta-lactamase VIM-2 by SPR based fragment screening

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x OH: HYDROXIDE ION(Non-covalent)

OH.1: 7 residues within 4Å: Chain A: H.114, H.116, D.118, H.179, C.198 Ligands: ZN.2, ZN.3 No protein-ligand interaction detected (PLIP)

3 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.114, H.116, D.118, H.179 Ligands: OH.1, ZN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.114, A:H.116, A:H.179, OH.1 ZN.3: 8 residues within 4Å: Chain A: H.114, D.118, R.119, H.179, C.198, H.240 Ligands: OH.1, ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.118, A:C.198, A:H.240, OH.1 ZN.4: 4 residues within 4Å: Chain A: A.132, H.153 Ligands: CL.5, CL.6 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.153

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: A.132, T.152, H.153 Ligands: ZN.4, CL.6 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: A.132, Y.134, H.153 Ligands: ZN.4, CL.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christopeit, T. et al., Discovery of Novel Inhibitor Scaffolds Against the Metallo-Beta-Lactamase Vim-2 by Spr Based Fragment Screening. J.Med.Chem. (2015)

Release Date

2015-11-04

Peptides

BETA-LACTAMASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-LACTAMASE

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