SMTL ID : 5ahm.1

IMP-bound form of the DeltaCBS mutant of IMPDH from Pseudomonas aeruginosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-octamer

Ligands

8 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 22 residues within 4Å: Chain A: A.67, M.69, N.187, G.212, S.213, I.214, C.215, T.217, D.248, G.249, G.250, M.269, M.270, G.271, S.272, Y.295, G.297, M.298, G.299, S.300, E.328, G.329 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.187, A:S.213, A:D.248, A:G.250, A:G.271, A:S.272, A:M.298, A:G.299, A:S.300, A:E.328 Water bridges: A:G.210, A:G.212, A:I.251, A:I.251, A:M.273 IMP.4: 21 residues within 4Å: Chain B: A.67, M.69, N.187, G.212, S.213, I.214, C.215, T.217, D.248, G.249, G.250, M.269, M.270, G.271, S.272, Y.295, G.297, M.298, G.299, E.328, G.329 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:N.187, B:S.213, B:D.248, B:G.250, B:G.271, B:S.272, B:Y.295, B:M.298, B:G.299, B:E.328 Water bridges: B:G.210, B:G.212, B:G.249, B:G.249, B:I.251, B:I.251, B:M.273 IMP.8: 22 residues within 4Å: Chain C: A.67, M.69, N.187, G.212, S.213, I.214, C.215, T.217, D.248, G.249, G.250, M.269, M.270, G.271, S.272, Y.295, G.297, M.298, G.299, S.300, E.328, G.329 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:N.187, C:S.213, C:D.248, C:G.250, C:G.271, C:S.272, C:M.298, C:G.299, C:S.300, C:E.328 Water bridges: C:G.210, C:G.212, C:I.251, C:I.251, C:M.273 IMP.11: 21 residues within 4Å: Chain D: A.67, M.69, N.187, G.212, S.213, I.214, C.215, T.217, D.248, G.249, G.250, M.269, M.270, G.271, S.272, Y.295, G.297, M.298, G.299, E.328, G.329 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:N.187, D:S.213, D:D.248, D:G.250, D:G.271, D:S.272, D:Y.295, D:M.298, D:G.299, D:E.328 Water bridges: D:G.210, D:G.212, D:G.249, D:G.249, D:I.251, D:I.251, D:M.273 IMP.15: 22 residues within 4Å: Chain E: A.67, M.69, N.187, G.212, S.213, I.214, C.215, T.217, D.248, G.249, G.250, M.269, M.270, G.271, S.272, Y.295, G.297, M.298, G.299, S.300, E.328, G.329 15 PLIP interactions: 15 interactions with chain E Hydrogen bonds: E:N.187, E:S.213, E:D.248, E:G.250, E:G.271, E:S.272, E:M.298, E:G.299, E:S.300, E:E.328 Water bridges: E:G.210, E:G.212, E:I.251, E:I.251, E:M.273 IMP.18: 21 residues within 4Å: Chain F: A.67, M.69, N.187, G.212, S.213, I.214, C.215, T.217, D.248, G.249, G.250, M.269, M.270, G.271, S.272, Y.295, G.297, M.298, G.299, E.328, G.329 17 PLIP interactions: 17 interactions with chain F Hydrogen bonds: F:N.187, F:S.213, F:D.248, F:G.250, F:G.271, F:S.272, F:Y.295, F:M.298, F:G.299, F:E.328 Water bridges: F:G.210, F:G.212, F:G.249, F:G.249, F:I.251, F:I.251, F:M.273 IMP.22: 22 residues within 4Å: Chain G: A.67, M.69, N.187, G.212, S.213, I.214, C.215, T.217, D.248, G.249, G.250, M.269, M.270, G.271, S.272, Y.295, G.297, M.298, G.299, S.300, E.328, G.329 15 PLIP interactions: 15 interactions with chain G Hydrogen bonds: G:N.187, G:S.213, G:D.248, G:G.250, G:G.271, G:S.272, G:M.298, G:G.299, G:S.300, G:E.328 Water bridges: G:G.210, G:G.212, G:I.251, G:I.251, G:M.273 IMP.25: 21 residues within 4Å: Chain H: A.67, M.69, N.187, G.212, S.213, I.214, C.215, T.217, D.248, G.249, G.250, M.269, M.270, G.271, S.272, Y.295, G.297, M.298, G.299, E.328, G.329 17 PLIP interactions: 17 interactions with chain H Hydrogen bonds: H:N.187, H:S.213, H:D.248, H:G.250, H:G.271, H:S.272, H:Y.295, H:M.298, H:G.299, H:E.328 Water bridges: H:G.210, H:G.212, H:G.249, H:G.249, H:I.251, H:I.251, H:M.273

20 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: Q.83, H.109, A.112, Y.117 Ligand excluded by PLIP PO4.3: 3 residues within 4Å: Chain A: D.123, E.124, R.129 Ligand excluded by PLIP PO4.5: 7 residues within 4Å: Chain B: L.238, E.239, G.240, T.241, G.242, V.243, Y.266 Ligand excluded by PLIP PO4.6: 3 residues within 4Å: Chain B: D.123, E.124, R.129 Ligand excluded by PLIP PO4.7: 4 residues within 4Å: Chain B: Q.83, H.109, T.111, Y.117 Ligand excluded by PLIP PO4.9: 4 residues within 4Å: Chain C: Q.83, H.109, A.112, Y.117 Ligand excluded by PLIP PO4.10: 3 residues within 4Å: Chain C: D.123, E.124, R.129 Ligand excluded by PLIP PO4.12: 7 residues within 4Å: Chain D: L.238, E.239, G.240, T.241, G.242, V.243, Y.266 Ligand excluded by PLIP PO4.13: 3 residues within 4Å: Chain D: D.123, E.124, R.129 Ligand excluded by PLIP PO4.14: 4 residues within 4Å: Chain D: Q.83, H.109, T.111, Y.117 Ligand excluded by PLIP PO4.16: 4 residues within 4Å: Chain E: Q.83, H.109, A.112, Y.117 Ligand excluded by PLIP PO4.17: 3 residues within 4Å: Chain E: D.123, E.124, R.129 Ligand excluded by PLIP PO4.19: 7 residues within 4Å: Chain F: L.238, E.239, G.240, T.241, G.242, V.243, Y.266 Ligand excluded by PLIP PO4.20: 3 residues within 4Å: Chain F: D.123, E.124, R.129 Ligand excluded by PLIP PO4.21: 4 residues within 4Å: Chain F: Q.83, H.109, T.111, Y.117 Ligand excluded by PLIP PO4.23: 4 residues within 4Å: Chain G: Q.83, H.109, A.112, Y.117 Ligand excluded by PLIP PO4.24: 3 residues within 4Å: Chain G: D.123, E.124, R.129 Ligand excluded by PLIP PO4.26: 7 residues within 4Å: Chain H: L.238, E.239, G.240, T.241, G.242, V.243, Y.266 Ligand excluded by PLIP PO4.27: 3 residues within 4Å: Chain H: D.123, E.124, R.129 Ligand excluded by PLIP PO4.28: 4 residues within 4Å: Chain H: Q.83, H.109, T.111, Y.117 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Labesse, G. et al., Crystallographic Studies of Two Variants of Pseudomonas Aeruginosa Impdh with Impaired Allosteric Regulation. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-07-15

Peptides

INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE

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