- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.87 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 9 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 5 residues within 4Å:- Chain A: T.266, G.267, A.270, V.338, H.357
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.338
- Hydrogen bonds: A:G.267
- Salt bridges: A:H.357
ACT.4: 4 residues within 4Å:- Chain A: T.266, F.350, A.355, H.357
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:A.355
- Salt bridges: A:H.357
ACT.9: 5 residues within 4Å:- Chain A: L.131, T.236, P.237, G.238, E.239
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.238
- Water bridges: A:T.236
ACT.12: 5 residues within 4Å:- Chain B: T.266, G.267, A.270, V.338, H.357
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:V.338
- Hydrogen bonds: B:G.267
- Salt bridges: B:H.357
ACT.13: 4 residues within 4Å:- Chain B: T.266, F.350, A.355, H.357
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.355
- Salt bridges: B:H.357
ACT.18: 5 residues within 4Å:- Chain B: L.131, T.236, P.237, G.238, E.239
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:G.238
ACT.21: 5 residues within 4Å:- Chain C: T.266, G.267, A.270, V.338, H.357
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:V.338
- Hydrogen bonds: C:G.267
- Salt bridges: C:H.357
ACT.22: 4 residues within 4Å:- Chain C: T.266, F.350, A.355, H.357
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:A.355
- Salt bridges: C:H.357
ACT.27: 5 residues within 4Å:- Chain C: L.131, T.236, P.237, G.238, E.239
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.238
- Water bridges: C:T.236
- 3 x NO2: NITRITE ION(Non-covalent)
NO2.5: 8 residues within 4Å:- Chain A: D.136, H.138, H.173
- Chain B: H.293, I.295, H.344, L.346
- Ligands: CU.2
No protein-ligand interaction detected (PLIP)NO2.14: 8 residues within 4Å:- Chain B: D.136, H.138, H.173
- Chain C: H.293, I.295, H.344, L.346
- Ligands: CU.11
No protein-ligand interaction detected (PLIP)NO2.23: 8 residues within 4Å:- Chain A: H.293, I.295, H.344, L.346
- Chain C: D.136, H.138, H.173
- Ligands: CU.20
No protein-ligand interaction detected (PLIP)- 6 x MLI: MALONATE ION(Non-functional Binders)
MLI.6: 5 residues within 4Å:- Chain A: A.65, H.66, Q.68, Y.210, I.213
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.66, A:H.66, A:Q.68
- Water bridges: A:H.66, A:I.213
- Salt bridges: A:H.66
MLI.7: 8 residues within 4Å:- Chain A: R.288, D.289
- Chain B: R.288, R.291, N.345, E.348
- Ligands: MLI.16, MLI.25
16 PLIP interactions:8 interactions with chain B, 8 interactions with chain A- Hydrogen bonds: B:N.345, A:D.289, A:D.289, A:R.291
- Water bridges: B:R.288, B:R.288, B:R.288, B:R.291, A:R.288, A:R.288, A:R.288
- Salt bridges: B:R.288, B:R.291, B:R.291, A:R.288, A:R.288
MLI.15: 5 residues within 4Å:- Chain B: A.65, H.66, Q.68, Y.210, I.213
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:H.66, B:H.66, B:Q.68
- Water bridges: B:H.66, B:I.213
- Salt bridges: B:H.66
MLI.16: 8 residues within 4Å:- Chain B: R.288, D.289
- Chain C: R.288, R.291, N.345, E.348
- Ligands: MLI.7, MLI.25
18 PLIP interactions:8 interactions with chain C, 3 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: C:N.345, B:D.289, B:R.291
- Water bridges: C:R.288, C:R.288, C:R.288, C:R.291, A:D.289, A:D.289, A:D.289, B:R.288, B:R.288, B:R.288
- Salt bridges: C:R.288, C:R.291, C:R.291, B:R.288, B:R.288
MLI.24: 5 residues within 4Å:- Chain C: A.65, H.66, Q.68, Y.210, I.213
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:H.66, C:H.66, C:Q.68
- Water bridges: C:H.66, C:I.213
- Salt bridges: C:H.66
MLI.25: 8 residues within 4Å:- Chain A: R.288, R.291, N.345, E.348
- Chain C: R.288, D.289
- Ligands: MLI.7, MLI.16
15 PLIP interactions:7 interactions with chain C, 8 interactions with chain A- Hydrogen bonds: C:D.289, C:R.291, A:N.345
- Water bridges: C:R.288, C:R.288, C:R.288, A:R.288, A:R.288, A:R.288, A:R.291
- Salt bridges: C:R.288, C:R.288, A:R.288, A:R.291, A:R.291
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 3 residues within 4Å:- Chain A: P.196, R.197, D.198
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:D.198
- Water bridges: A:R.197, A:R.197, A:D.198, A:D.198, A:K.201, A:K.201, A:K.201
- Salt bridges: A:K.201
SO4.17: 3 residues within 4Å:- Chain B: P.196, R.197, D.198
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.198
- Water bridges: B:R.197, B:R.197, B:K.201, B:K.201, B:K.201, B:K.201
- Salt bridges: B:K.201
SO4.26: 3 residues within 4Å:- Chain C: P.196, R.197, D.198
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:D.198
- Water bridges: C:R.197, C:R.197, C:K.201, C:K.201, C:K.201
- Salt bridges: C:K.201
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Blakeley, M.P. et al., Sub-Atomic Resolution X-Ray Crystallography and Neutron Crystallography: Promise, Challenges and Potential. Iucrj (2015)
- Release Date
- 2015-07-08
- Peptides
- COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.87 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x CU: COPPER (II) ION(Non-covalent)
- 9 x ACT: ACETATE ION(Non-functional Binders)
- 3 x NO2: NITRITE ION(Non-covalent)
- 6 x MLI: MALONATE ION(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Blakeley, M.P. et al., Sub-Atomic Resolution X-Ray Crystallography and Neutron Crystallography: Promise, Challenges and Potential. Iucrj (2015)
- Release Date
- 2015-07-08
- Peptides
- COPPER-CONTAINING NITRITE REDUCTASE: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A