SMTL ID : 5amm.1 (1 other biounit)

Structure of Leishmania major peroxidase D211N mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: P.27, S.28, I.30, R.31, W.34, P.129, D.130, G.131, F.142, L.155, I.156, A.158, H.159, G.162, E.163, C.164, H.165, F.168, S.169, Y.171, W.175, L.217, S.219, F.251 22 PLIP interactions: 21 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:I.30, A:R.31, A:W.34, A:W.34, A:P.129, A:F.142, A:L.155, A:I.156, A:A.158, A:Y.171, A:W.175, A:L.217, A:F.251 Hydrogen bonds: A:E.163, A:H.165, A:S.169 Salt bridges: A:R.31, A:H.165, A:H.165 pi-Stacking: A:W.34 Metal complexes: A:H.159, H2O.1

1 x K: POTASSIUM ION(Non-covalent)

K.2: 5 residues within 4Å: Chain A: T.160, T.176, N.178, G.181, S.185 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:T.160, A:T.160, A:T.176, A:N.178, A:G.181

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 7 residues within 4Å: Chain A: E.36, S.39, G.47, S.48, P.49, S.53, E.59 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.36, A:S.48, A:S.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fields, J.B. et al., Bind and Crawl" Association Mechanism of Leishmania Major Peroxidase and Cytochrome C Revealed by Brownian and Molecular Dynamics Simulations. Biochemistry (2015)

Release Date

2015-12-09

Peptides

ASCORBATE PEROXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ASCORBATE PEROXIDASE

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