SMTL ID : 5ao7.1

Crystal Structure of SltB3 from Pseudomonas aeruginosa in complex with NAG-anhNAM-pentapeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.218, D.220, D.222, K.224, D.233 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.218, A:D.222, A:K.224, A:D.233, H2O.7

1 x AH0: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID(Non-covalent)

AH0.2: 8 residues within 4Å: Chain A: R.108, G.142, M.143, E.144, S.145, N.146, H.150 Ligands: NAG.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.108 Salt bridges: A:H.150

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 10 residues within 4Å: Chain A: M.143, E.144, H.150, M.151, G.152, A.201, Q.206, N.327, Y.332 Ligands: AH0.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.144, A:E.144, A:N.327 Water bridges: A:Y.99, A:Y.99, A:S.197 NAG.4: 8 residues within 4Å: Chain A: T.205, Q.206, F.207, I.208, T.211, Y.241, K.325, Y.326 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.207, A:Y.326 Hydrogen bonds: A:I.208, A:Y.326

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 9 residues within 4Å: Chain A: P.379, A.381, D.383, I.385, I.386, G.387, A.388, N.389, T.390 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:P.379, A:D.383, A:I.385, A:G.387, A:A.388, A:N.389, A:T.390 Water bridges: A:N.389

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 3 residues within 4Å: Chain A: Q.58, E.171, H.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.58 Water bridges: A:E.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, M. et al., Turnover of Bacterial Cell Wall by Sltb3, a Multidomain Lytic Transglycosylase of Pseudomonas Aeruginosa. Acs Chem.Biol. (2016)

Release Date

2016-07-20

Peptides

SOLUBLE LYTIC TRANSGLYCOSYLASE B3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SOLUBLE LYTIC TRANSGLYCOSYLASE B3

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