SMTL ID : 5ao8.1

Crystal Structure of SltB3 from Pseudomonas aeruginosa in complex with NAG-NAM-pentapeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x NM9- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-methyl 2-acetamido-3-O-[(2R)-1-amino-1-oxopropan-2-yl]-2-deoxy-beta-D-glucopyranoside(Non-covalent)

NM9-NAG.1: 16 residues within 4Å: Chain A: Y.99, G.102, R.108, G.142, M.143, E.144, S.145, N.146, H.150, M.151, G.152, S.197, A.201, Q.206, N.327, Y.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.99, A:E.144, A:E.144, A:Q.206, A:N.327, A:G.142, A:N.146 Salt bridges: A:R.108

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.218, D.220, D.222, K.224, D.226, D.233 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.218, A:D.220, A:D.222, A:K.224, A:D.233

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 9 residues within 4Å: Chain A: F.172, Q.206, F.207, I.208, T.211, Y.241, K.325, Y.326, N.327 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.207, A:Y.326 Hydrogen bonds: A:I.208, A:T.211, A:Y.241, A:Y.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, M. et al., Turnover of Bacterial Cell Wall by Sltb3, a Multidomain Lytic Transglycosylase of Pseudomonas Aeruginosa. Acs Chem.Biol. (2016)

Release Date

2016-07-20

Peptides

SOLUBLE LYTIC TRANGLYCOSILASE B3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SOLUBLE LYTIC TRANGLYCOSILASE B3