SMTL ID : 5aoc.1

The structure of a novel thermophilic esterase from the Planctomycetes species, Thermogutta terrifontis, Est2-valerate bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x LEA: PENTANOIC ACID(Non-covalent)

LEA.1: 6 residues within 4Å: Chain A: G.52, G.53, G.54, S.126, A.127, H.248 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.53, A:G.54, A:S.126, A:A.127 Salt bridges: A:H.248

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 8 residues within 4Å: Chain A: V.136, M.137, V.138, P.139, D.140, S.152, Q.153, R.202 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.140, A:Q.153, A:R.202 PG4.3: 9 residues within 4Å: Chain A: R.107, Q.118, I.150, S.151, Q.153, N.155, P.206, P.207 Ligands: EDO.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.118, A:S.151, A:N.155

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: I.165, R.168 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.167, A:R.168 EDO.5: 5 residues within 4Å: Chain A: G.85, S.86, R.87, H.88, N.89 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: V.3, L.6, A.61, Q.62, F.253 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.253 EDO.7: 3 residues within 4Å: Chain A: D.42, R.43, R.44 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.42, A:R.43, A:R.43 EDO.8: 4 residues within 4Å: Chain A: H.148, T.149, S.151 Ligands: PG4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.148 EDO.9: 4 residues within 4Å: Chain A: H.199, H.200, I.201, R.202 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.202 EDO.10: 3 residues within 4Å: Chain A: Y.69, Q.262, E.266 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.69, A:E.266

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.11: 6 residues within 4Å: Chain A: W.55, Q.56, V.90, K.91, V.92, R.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.55, A:Q.56, A:G.85 Water bridges: A:V.92 PEG.12: 4 residues within 4Å: Chain A: H.248, F.250, R.255, G.256 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.255 PEG.13: 3 residues within 4Å: Chain A: V.19, Y.20, K.22 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.22, A:E.145

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 5 residues within 4Å: Chain A: A.215, D.216, N.217, A.247, H.248 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sayer, C. et al., The Structure of a Novel Thermophilic Esterase from the Planctomycetes Species, Thermogutta Terrifontis Reveals an Open Active Site due to a Minimal 'CAP' Domain. Front.Microbiol. (2015)

Release Date

2015-12-09

Peptides

ESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ESTERASE

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