SMTL ID : 5aos.1

Structure of a novel carbohydrate binding module from Ruminococcus flavefaciens FD-1 endoglucanase Cel5A solved at the As edge

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.1: 4 residues within 4Å: Chain A: H.101, H.102, H.103, H.104 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.101, A:H.102, A:H.103, A:H.104

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: N.24, E.67, P.69 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.24, A:N.24, A:E.67 GOL.3: 5 residues within 4Å: Chain A: W.54, E.55, V.66, E.67, V.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.55, A:E.55, A:E.67 GOL.4: 3 residues within 4Å: Chain A: W.85, W.86, H.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.87 Water bridges: A:H.87, A:H.87 GOL.5: 4 residues within 4Å: Chain A: S.71, K.72, I.73, P.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.71, A:K.72 Water bridges: A:A.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venditto, I. et al., Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition. Proc. Natl. Acad. Sci. U.S.A. (2016)

Release Date

2016-06-29

Peptides

Carbohydrate binding module: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbohydrate binding module