SMTL ID : 5aou.1

Structure of the engineered retro-aldolase RA95.5-8F apo

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: E.188, I.189, N.190 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.188, A:N.190 Water bridges: A:N.183 EDO.2: 2 residues within 4Å: Chain A: D.90, S.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.92 EDO.3: 5 residues within 4Å: Chain A: F.40, I.45, P.75, Y.76, I.247 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.36 Water bridges: A:P.75 EDO.4: 7 residues within 4Å: Chain A: I.45, T.46, A.47, R.223, V.227, N.228, F.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.47, A:N.228 EDO.5: 1 residues within 4Å: Chain A: R.171 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.171, A:R.171

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 2 residues within 4Å: Chain A: Y.4, Q.14 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.4, A:Y.4, A:Y.4, A:Q.14 PO4.7: 4 residues within 4Å: Chain A: D.162, E.163, N.193, K.196 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.163, A:N.193, A:N.193 Water bridges: A:N.164, A:N.193 Salt bridges: A:K.196 PO4.8: 2 residues within 4Å: Chain A: K.115, E.116 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.116, A:E.116 Water bridges: A:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obexer, R. et al., Emergence of a catalytic tetrad during evolution of a highly active artificial aldolase. Nat Chem (2017)

Release Date

2016-08-17

Peptides

INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE

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