SMTL ID : 5aq8.1

DARPin-based Crystallization Chaperones exploit Molecular Geometry as a Screening Dimension in Protein Crystallography

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 7 residues within 4Å: Chain A: L.100, K.101, N.102, G.103, H.135, E.201, E.202 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.135 Water bridges: A:L.100, A:H.135, A:E.202 EPE.5: 9 residues within 4Å: Chain A: S.208, Y.243, S.268, V.354, K.372, S.373, G.374, A.375, R.381 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.208, A:R.381 Water bridges: A:S.208, A:S.208, A:K.211, A:Y.243, A:S.373, A:S.373, A:R.381 Salt bridges: A:K.372

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.2: 5 residues within 4Å: Chain A: R.31, E.61, E.64, V.65, K.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.64 Water bridges: A:R.31 SCN.3: 4 residues within 4Å: Chain A: A.375, G.376, E.377, M.408 No protein-ligand interaction detected (PLIP) SCN.4: 5 residues within 4Å: Chain A: Y.89, M.114, L.119, K.122, W.123 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Batyuk, A. et al., Darpin-Based Crystallization Chaperones Exploit Molecular Geometry as a Screening Dimension in Protein Crystallography. J.Mol.Biol. (2016)

Release Date

2016-03-23

Peptides

OFF7_DB12V4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

OFF7_DB12V4