SMTL ID : 5arb.1

Cooperative bio-metallic selectivity in a tailored protease enables creation of a C-C cross-coupling Heckase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: Q.2, D.40, L.73, N.75, I.77, V.79 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.40, A:D.40, A:L.73, A:I.77, A:V.79

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.246, T.247, A.248, T.249, A.266 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.246 Water bridges: A:A.248, A:T.249, A:S.250, A:N.263, A:N.263, A:R.269 GOL.3: 7 residues within 4Å: Chain A: E.53, Q.57, D.58, G.59, K.92, A.96 Ligands: CL.6 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.53, A:S.55, A:G.59 GOL.4: 6 residues within 4Å: Chain A: L.94, G.98, S.99, G.100, L.124, G.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.100, A:G.125

1 x EI3: 5-methyl-2-(5-methylpyridin-2-yl)pyridine(Covalent)

EI3.5: 4 residues within 4Å: Chain A: Y.203, A.209, S.210, C.211 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.203, A:A.209 Hydrogen bonds: A:Y.203

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: E.53, P.54, S.55, K.92 Ligands: GOL.3 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, M. et al., Cooperative Bio-Metallic Selectivity in a Tailored Protease Enables Creation of a C-C Cross-Coupling Heckase. To be Published

Release Date

2016-09-14

Peptides

SUBTILISIN SAVINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SUBTILISIN SAVINASE

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