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SMTL ID : 5aus.1
Hydrogenobacter thermophilus cytochrome c552 dimer formed by domain swapping at C-terminal region
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.30 Å
Oligo State
homo-dimer
Ligands
2 x
HEC
:
HEME C
(Covalent)
HEC.1:
24 residues within 4Å:
Chain A:
G.9
,
C.10
,
C.13
,
H.14
,
V.24
,
G.25
,
P.26
,
Y.28
,
Y.35
,
Y.44
,
L.45
,
K.48
,
I.49
,
G.53
,
S.54
,
G.55
,
V.56
,
W.57
Chain B:
G.21
,
V.60
,
M.62
,
P.63
,
Q.65
,
V.67
17
PLIP interactions
:
13 interactions with chain A
,
4 interactions with chain B
,
Hydrophobic interactions:
A:Y.28
,
A:L.45
,
A:K.48
,
A:I.49
,
A:I.49
,
B:M.62
,
B:P.63
,
B:Q.65
,
B:V.67
Hydrogen bonds:
A:Y.35
,
A:Y.44
,
A:G.55
,
A:V.56
,
A:W.57
Water bridges:
A:W.57
Salt bridges:
A:K.48
Metal complexes:
A:H.14
HEC.2:
26 residues within 4Å:
Chain A:
V.60
,
P.61
,
M.62
,
P.63
,
Q.65
,
I.79
Chain B:
G.9
,
C.10
,
C.13
,
H.14
,
V.24
,
G.25
,
P.26
,
Y.28
,
V.31
,
Y.35
,
Y.44
,
L.45
,
K.48
,
I.49
,
G.53
,
S.54
,
G.55
,
V.56
,
W.57
,
G.58
18
PLIP interactions
:
14 interactions with chain B
,
4 interactions with chain A
,
Hydrophobic interactions:
B:Y.28
,
B:V.31
,
B:L.45
,
B:K.48
,
B:I.49
,
A:M.62
,
A:Q.65
,
A:I.79
Hydrogen bonds:
B:Y.35
,
B:Y.44
,
B:G.55
,
B:V.56
,
B:W.57
,
B:G.58
Water bridges:
B:S.54
,
A:S.59
Salt bridges:
B:K.48
Metal complexes:
B:H.14
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Ren, C. et al., Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552via the elongation of the major hinge loop. Mol Biosyst (2015)
Release Date
2015-10-21
Peptides
Cytochrome c-552:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
C
Export Alignment
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Secondary Structure
None
DSSP
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Fade Mismatches
Enhance Mismatches
Chain
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2° Structure
Bfactor
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Cytochrome c-552
Related Entries With Identical Sequence
5aur.1
|
5aur.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme