SMTL ID : 5axk.1

Crystal structure of Thg1 like protein (TLP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: K.26, F.34, F.42, D.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.26, A:D.69 Water bridges: A:D.39, A:D.39 GOL.2: 3 residues within 4Å: Chain B: G.33, D.39, T.41 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.41 GOL.3: 4 residues within 4Å: Chain B: F.25, K.26, F.42, D.69 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.69 Water bridges: B:P.37, B:D.39 GOL.4: 4 residues within 4Å: Chain B: K.40, P.184, W.186, Q.187 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.186, B:Q.187 GOL.5: 3 residues within 4Å: Chain B: K.40, R.44, W.222 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.40, B:K.40, B:R.44, B:R.44 GOL.6: 4 residues within 4Å: Chain C: K.26, F.34, F.42, D.69 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.26, C:D.69 Water bridges: C:D.39, C:D.39 GOL.7: 3 residues within 4Å: Chain D: G.33, D.39, T.41 No protein-ligand interaction detected (PLIP) GOL.8: 4 residues within 4Å: Chain D: F.25, K.26, F.42, D.69 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.69 Water bridges: D:P.37, D:D.39 GOL.9: 4 residues within 4Å: Chain D: K.40, P.184, W.186, Q.187 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:W.186, D:Q.187 GOL.10: 3 residues within 4Å: Chain D: K.40, R.44, W.222 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.40, D:K.40, D:R.44, D:R.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kimura, S. et al., Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein. Sci Adv (2016)

Release Date

2016-08-03

Peptides

tRNA(His)-5'-guanylyltransferase (Thg1) like protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

tRNA(His)-5'-guanylyltransferase (Thg1) like protein

Related Entries With Identical Sequence