SMTL ID : 5axm.1

Crystal structure of Thg1 like protein (TLP) with tRNA(Phe)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-tetramer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.21, G.22, D.69 Chain C: G.1 Ligands: MG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.21, A:G.22, A:D.69, H2O.4 MG.2: 4 residues within 4Å: Chain A: D.21, D.69 Chain C: G.1 Ligands: MG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.21, A:D.21, A:D.69, H2O.1 MG.3: 4 residues within 4Å: Chain B: D.21, G.22, D.69 Ligands: MG.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.21, B:G.22, B:D.69, H2O.3, H2O.4 MG.4: 3 residues within 4Å: Chain B: D.21, D.69 Ligands: MG.3 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.21, B:D.69, H2O.3, H2O.4 MG.5: 5 residues within 4Å: Chain D: D.21, G.22, D.69 Chain F: G.1 Ligands: MG.6 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.21, D:G.22, D:D.69, H2O.8 MG.6: 4 residues within 4Å: Chain D: D.21, D.69 Chain F: G.1 Ligands: MG.5 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.21, D:D.21, D:D.69, H2O.5 MG.7: 4 residues within 4Å: Chain E: D.21, G.22, D.69 Ligands: MG.8 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.21, E:G.22, E:D.69, H2O.7, H2O.8 MG.8: 3 residues within 4Å: Chain E: D.21, D.69 Ligands: MG.7 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.21, E:D.69, H2O.7, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kimura, S. et al., Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein. Sci Adv (2016)

Release Date

2016-08-03

Peptides

tRNA(His)-5'-guanylyltransferase (Thg1) like protein: ABDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
A

E
B

tRNA(His)-5'-guanylyltransferase (Thg1) like protein

Related Entries With Identical Sequence