SMTL ID : 5ayu.1

Crystal structure of HyHEL-10 Fv

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: K.49, Y.50, Q.89, S.91, Y.96 Chain B: W.98, D.99 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.49, A:K.49, A:Q.89, B:D.99, B:D.99 GOL.2: 5 residues within 4Å: Chain B: F.40, P.41, G.42, N.43, R.44 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.42, B:G.42, B:R.44, B:R.44 GOL.3: 7 residues within 4Å: Chain B: Y.33, Y.50, S.52, Y.53, S.54, S.56, Y.58 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.33, B:Y.50, B:S.52, B:S.54, B:S.56, B:Y.58 Water bridges: B:S.54 GOL.4: 6 residues within 4Å: Chain A: H.41 Chain B: K.39, T.92, Y.94, G.106, L.108 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.39, B:T.92, B:Y.94, B:G.106, A:H.41 Water bridges: B:L.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakanishi, T. et al., Crystal structure of HyHEL-10 Fv. To Be Published

Release Date

2016-09-07

Peptides

lysozyme binding Ig kappa chain V23-J2 region: A
Ig VH,anti-lysozyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

lysozyme binding Ig kappa chain V23-J2 region

Ig VH,anti-lysozyme

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