SMTL ID : 5az0.1

Crystal structure of aldo-keto reductase (AKR2E5) of the silkworm, Bombyx mori

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: R.96, L.128, D.129, H.130 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: S.205, A.207, Y.266, A.304, D.307 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.205, A:A.304 Water bridges: A:D.211, A:Y.266, A:R.270

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 8 residues within 4Å: Chain A: N.176, F.177, N.178, I.198, Q.206, L.209, R.311, F.326 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:N.178, A:L.209, A:F.326 Hydrogen bonds: A:F.177, A:Q.206 Water bridges: A:E.199 Salt bridges: A:R.311 ACT.4: 4 residues within 4Å: Chain A: F.9, Q.214, V.219, G.271 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.9 Hydrogen bonds: A:K.10 Water bridges: A:Q.214 ACT.5: 6 residues within 4Å: Chain A: G.23, T.24, W.25, D.70, Y.75, I.275 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.275 Hydrogen bonds: A:T.24, A:W.25, A:D.70 Salt bridges: A:K.104 ACT.6: 4 residues within 4Å: Chain A: G.309, F.310, R.311, R.314 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.310 Hydrogen bonds: A:R.311 Salt bridges: A:R.314 ACT.7: 2 residues within 4Å: Chain A: R.67, D.98 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.67 Salt bridges: A:R.67 ACT.8: 5 residues within 4Å: Chain A: Y.153, E.180, Q.181, R.184, N.323 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.153, A:Y.153, A:N.323 ACT.9: 5 residues within 4Å: Chain A: S.205, Q.206, A.207, D.208, D.307 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.207 Hydrogen bonds: A:A.207, A:D.208 Water bridges: A:Q.206, A:L.209 ACT.10: 4 residues within 4Å: Chain A: T.278, V.279, T.280, R.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.279 Salt bridges: A:R.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamamoto, K. et al., Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori. Biochem.Biophys.Res.Commun. (2016)

Release Date

2016-02-10

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

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