- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 1 x 22B: BACTERIORUBERIN(Non-covalent)
22B.2: 18 residues within 4Å:- Chain A: T.147, K.148, T.151, F.155, A.181, I.182, A.185, V.189, E.197
- Chain B: I.49, V.53, T.56, K.65, A.68, V.69, I.72, V.76, I.79
18 PLIP interactions:9 interactions with chain B, 9 interactions with chain A- Hydrophobic interactions: B:I.49, B:I.49, B:V.53, B:K.65, B:A.68, B:I.72, B:V.76, B:V.76, B:I.79, A:T.147, A:T.151, A:F.155, A:F.155, A:F.155, A:A.181, A:I.182, A:A.185, A:V.189
- 3 x L3P: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE(Non-covalent)
L3P.3: 8 residues within 4Å:- Chain A: S.92, V.93, L.94, W.121, L.125, L.164, L.168
- Ligands: L3P.4
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.94, A:W.121, A:L.125, A:L.164, A:L.168
L3P.4: 14 residues within 4Å:- Chain A: V.77, A.80, S.81, L.89, T.90, L.125, L.129
- Chain C: T.154, I.157, A.158, V.161, A.165, W.179
- Ligands: L3P.3
10 PLIP interactions:4 interactions with chain C, 6 interactions with chain A- Hydrophobic interactions: C:T.154, C:I.157, C:A.165, C:W.179, A:L.89, A:L.89, A:T.90, A:L.125, A:L.129, A:L.129
L3P.9: 3 residues within 4Å:- Chain B: S.92, W.121, L.168
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:W.121, B:L.168
- 4 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)
BNG.5: 6 residues within 4Å:- Chain A: A.98, G.99, H.173, L.174, W.177
- Ligands: BNG.6
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:L.174, A:W.177, A:W.177
- Hydrogen bonds: A:A.98, A:H.173, A:L.174
- Water bridges: A:H.173, A:H.173
- Salt bridges: A:H.173
BNG.6: 5 residues within 4Å:- Chain A: G.99, F.101, H.173, W.177
- Ligands: BNG.5
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.101, A:W.177, A:W.177
- Hydrogen bonds: A:G.99
- Salt bridges: A:H.173
BNG.7: 6 residues within 4Å:- Chain A: F.25, E.26, L.29
- Chain C: L.174, M.175, F.178
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:L.174, C:F.178, C:F.178, C:F.178
- Hydrogen bonds: A:E.26
BNG.10: 12 residues within 4Å:- Chain B: T.151, F.155, A.185, C.186, V.189, Y.192, I.193, E.197
- Chain C: I.49, V.53, K.65, V.76
12 PLIP interactions:3 interactions with chain C, 9 interactions with chain B- Hydrogen bonds: C:K.65, B:E.197
- Water bridges: C:T.56, C:T.56, B:T.151, B:T.151, B:T.151, B:T.151, B:E.197, B:E.197
- Hydrophobic interactions: B:F.155, B:F.155
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, S.K. et al., Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States. Biochemistry (2016)
- Release Date
- 2016-07-27
- Peptides
- Halorhodopsin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 1 x 22B: BACTERIORUBERIN(Non-covalent)
- 3 x L3P: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE(Non-covalent)
- 4 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, S.K. et al., Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States. Biochemistry (2016)
- Release Date
- 2016-07-27
- Peptides
- Halorhodopsin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
D - Membrane
-
We predict this structure to be a membrane protein.