- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 1 x ILE: ISOLEUCINE(Covalent)
- 3 x RET: RETINAL(Covalent)
- 3 x L3P: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE(Non-covalent)
L3P.4: 15 residues within 4Å:- Chain B: T.154, I.157, A.158, V.161, A.165, W.179
- Chain C: V.77, A.80, S.81, G.84, L.89, T.90, W.121, L.129
- Ligands: L3P.8
10 PLIP interactions:4 interactions with chain B, 6 interactions with chain C- Hydrophobic interactions: B:A.158, B:V.161, B:A.165, B:W.179, C:V.77, C:A.80, C:L.89, C:T.90, C:W.121, C:L.129
L3P.5: 11 residues within 4Å:- Chain A: T.154, I.157, V.161, W.179
- Chain B: V.77, A.80, G.84, L.89, T.90, W.121, L.129
9 PLIP interactions:3 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:T.154, A:I.157, A:W.179, B:V.77, B:L.89, B:L.89, B:T.90, B:W.121, B:L.129
L3P.8: 7 residues within 4Å:- Chain C: S.92, V.93, L.94, W.121, L.164, L.168
- Ligands: L3P.4
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.121, C:L.164, C:L.168
- 3 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)
BNG.6: 6 residues within 4Å:- Chain A: L.174, M.175, F.178
- Chain B: F.25, E.26, I.42
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.174, A:F.178, A:F.178, B:I.42
- Hydrogen bonds: B:E.26, B:E.26
- Water bridges: B:R.22
BNG.9: 6 residues within 4Å:- Chain C: A.98, G.99, H.173, L.174, W.177, Y.180
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:W.177, C:W.177, C:Y.180
- Hydrogen bonds: C:A.98, C:H.173
- Water bridges: C:L.174
- Salt bridges: C:H.173
BNG.10: 11 residues within 4Å:- Chain A: I.49, V.53, K.65
- Chain C: F.155, I.182, A.185, C.186, V.189, Y.192, I.193, E.197
11 PLIP interactions:6 interactions with chain C, 5 interactions with chain A- Hydrophobic interactions: C:F.155, C:F.155, C:I.182, C:A.185, C:V.189, A:I.49
- Hydrogen bonds: C:E.197, A:K.65, A:K.65
- Water bridges: A:T.56, A:T.56
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, S.K. et al., Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States. Biochemistry (2016)
- Release Date
- 2016-07-27
- Peptides
- Halorhodopsin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
G - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-trimer
- Ligands
- 1 x ILE: ISOLEUCINE(Covalent)
- 3 x RET: RETINAL(Covalent)
- 3 x L3P: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE(Non-covalent)
- 3 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chan, S.K. et al., Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States. Biochemistry (2016)
- Release Date
- 2016-07-27
- Peptides
- Halorhodopsin: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
G - Membrane
-
We predict this structure to be a membrane protein.