SMTL ID : 5b1h.3 (2 other biounits)

Crystal structure of cystathionine beta-synthase from Lactobacillus plantarum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.42, T.69, A.70, G.71, N.72, T.73, Q.142 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.69, A:A.70, A:T.73, A:T.73, A:Q.142 Water bridges: A:N.72, A:N.72 SO4.2: 3 residues within 4Å: Chain A: R.250, H.251, R.254 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.250, A:H.251, A:R.254 SO4.6: 7 residues within 4Å: Chain B: K.42, T.69, A.70, G.71, N.72, T.73, Q.142 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.69, B:T.69, B:A.70, B:T.73, B:T.73, B:Q.142 Water bridges: B:N.72, B:N.72 SO4.7: 3 residues within 4Å: Chain B: R.250, H.251, R.254 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.250, B:H.251, B:R.254

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: I.20, E.21, V.22, N.24, H.25 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.20, A:V.22, A:H.25 Water bridges: A:H.25 GOL.4: 3 residues within 4Å: Chain A: L.2, Q.4, E.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.2, A:Q.4 GOL.5: 5 residues within 4Å: Chain A: T.169, P.279, A.280, N.281, S.282 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.282 GOL.8: 5 residues within 4Å: Chain B: I.20, E.21, V.22, N.24, H.25 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.20, B:V.22, B:H.25 Water bridges: B:H.25 GOL.9: 3 residues within 4Å: Chain B: L.2, Q.4, E.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.2, B:Q.4 GOL.10: 5 residues within 4Å: Chain B: T.169, P.279, A.280, N.281, S.282 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.169, B:S.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matoba, Y. et al., Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum. Protein Sci. (2017)

Release Date

2016-12-07

Peptides

Cystathionine beta-synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
D

Cystathionine beta-synthase

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