SMTL ID : 5b1y.1

Crystal structure of NADPH bound carbonyl reductase from Aeropyrum pernix

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 27 residues within 4Å: Chain A: G.30, S.32, R.33, G.34, I.35, A.53, Y.54, K.55, S.56, R.57, V.81, D.82, V.83, A.109, A.110, G.111, V.159, A.160, S.161, Y.175, K.179, P.205, S.206, F.207, V.208, T.210, M.212 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:P.205 Hydrogen bonds: A:G.30, A:S.32, A:R.33, A:R.33, A:R.33, A:I.35, A:K.55, A:S.56, A:R.57, A:D.82, A:D.82, A:V.83, A:G.111, A:Y.175, A:K.179, A:V.208, A:V.208 Water bridges: A:S.32, A:S.32, A:R.33, A:G.36, A:S.56, A:S.56, A:N.108, A:G.111, A:V.159, A:T.210 Salt bridges: A:R.33 NDP.2: 27 residues within 4Å: Chain B: G.30, S.32, R.33, G.34, I.35, A.53, Y.54, K.55, S.56, R.57, V.81, D.82, V.83, A.109, A.110, G.111, V.159, A.160, S.161, Y.175, K.179, P.205, S.206, F.207, V.208, T.210, D.211 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:P.205 Hydrogen bonds: B:G.30, B:S.32, B:R.33, B:R.33, B:I.35, B:K.55, B:S.56, B:R.57, B:V.81, B:D.82, B:V.83, B:G.111, B:Y.175, B:K.179, B:V.208, B:V.208, B:T.210, B:T.210 Water bridges: B:S.32, B:S.32, B:R.33, B:R.33, B:R.33, B:G.36, B:N.108, B:A.110, B:D.211 Salt bridges: B:R.33, B:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fukuda, Y. et al., Catalytic properties and crystal structure of thermostable NAD(P)H-dependent carbonyl reductase from the hyperthermophilic archaeon Aeropyrum pernix K1. Enzyme.Microb.Technol. (2016)

Release Date

2016-06-15

Peptides

3-oxoacyl-[acyl-carrier-protein] reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxoacyl-[acyl-carrier-protein] reductase