SMTL ID : 5b2c.1

Crystal structure of Mumps virus hemagglutinin-neuraminidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-dimer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.182, T.184 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.182, A:T.184, A:T.184 Water bridges: A:N.182 NAG.2: 5 residues within 4Å: Chain A: R.236, E.237, F.238, S.296, N.298 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.236, A:E.237, A:N.298 NAG.3: 4 residues within 4Å: Chain A: Q.299, N.346, M.347, S.348 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.348 NAG.4: 4 residues within 4Å: Chain A: N.405, L.423, L.426, Q.432 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.423 Hydrogen bonds: A:Q.432, A:Q.432 NAG.6: 3 residues within 4Å: Chain B: D.149, N.182, T.184 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.149, B:D.149, B:T.184 Water bridges: B:N.182 NAG.7: 4 residues within 4Å: Chain B: R.236, E.237, S.296, N.298 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.237, B:E.237, B:S.296, B:N.298 NAG.8: 4 residues within 4Å: Chain B: Q.299, N.346, M.347, S.348 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.299, B:N.346 Water bridges: B:M.347, B:W.349 NAG.9: 4 residues within 4Å: Chain B: N.405, L.423, L.426, Q.432 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.423, B:L.426 Hydrogen bonds: B:Q.432, B:Q.432

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.78, R.320, R.410, Y.438 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.438 Salt bridges: A:R.78, A:R.320, A:R.410 SO4.10: 4 residues within 4Å: Chain B: R.78, R.320, R.410, Y.438 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.438, B:Y.438 Salt bridges: B:R.78, B:R.320, B:R.410

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubota, M. et al., Trisaccharide containing alpha 2,3-linked sialic acid is a receptor for mumps virus. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-09-28

Peptides

HN protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HN protein

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