SMTL ID : 5b2f.1

N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii complexed with its inhibitor MPG (phosphate-containing condition)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: P.43, H.44, D.47, H.155 Chain C: H.264 Ligands: MQG.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.44, A:D.47, A:D.47, A:H.155 ZN.3: 4 residues within 4Å: Chain B: H.44, D.47, H.155 Ligands: MQG.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.44, B:D.47, B:D.47, B:H.155 ZN.5: 4 residues within 4Å: Chain C: H.44, D.47, H.155 Ligands: MQG.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.44, C:D.47, C:D.47, C:H.155

3 x MQG: 2-deoxy-2-{[(S)-hydroxy(methyl)phosphoryl]amino}-beta-D-glucopyranose(Non-covalent)

MQG.2: 15 residues within 4Å: Chain A: H.44, D.46, D.47, I.50, G.74, G.77, R.92, D.115, T.116, H.152, H.155, Q.223 Chain C: L.171, H.264 Ligands: ZN.1 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:G.74, A:R.92, A:R.92 Water bridges: A:D.46, A:Q.223, C:H.264 Salt bridges: A:H.44, A:H.152, C:H.264 MQG.4: 16 residues within 4Å: Chain A: F.168, L.171, H.264 Chain B: H.44, D.46, D.47, I.50, G.74, M.76, G.77, R.92, D.115, T.116, H.152, H.155 Ligands: ZN.3 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.74, B:R.92, B:R.92, A:H.264 Water bridges: B:D.46, B:Q.223 Salt bridges: B:H.44, B:H.152, A:H.264 MQG.6: 15 residues within 4Å: Chain B: H.264 Chain C: H.44, D.46, D.47, I.50, G.74, M.76, G.77, R.92, D.115, T.116, H.152, H.155, Q.223 Ligands: ZN.5 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.74, C:R.92, C:R.92 Water bridges: C:D.46, C:Q.223, B:H.264 Salt bridges: C:H.44, C:H.152, B:H.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, T. et al., Substrate recognition of N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii. J.Struct.Biol. (2016)

Release Date

2016-08-10

Peptides

Putative uncharacterized protein PH0499: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Putative uncharacterized protein PH0499

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