SMTL ID : 5b3i.2 (1 other biounit)

Homo-dimeric structure of cytochrome c' from Thermophilic Hydrogenophilus thermoluteolus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x HEC: HEME C(Covalent)

HEC.1: 15 residues within 4Å: Chain A: V.9, R.12, Q.13, Y.16, A.20, Y.61, K.72, S.74, R.75, L.76, F.94, C.124, C.127, H.128, R.132 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:Y.16, A:Y.16, A:Y.16, A:A.20, A:L.76, A:F.94, A:F.94, A:R.132 Hydrogen bonds: A:Q.13, A:R.75 Water bridges: A:T.17 Salt bridges: A:R.12, A:K.72, A:R.75 pi-Stacking: A:Y.16 pi-Cation interactions: A:R.132 Metal complexes: A:H.128 HEC.2: 17 residues within 4Å: Chain A: F.71 Chain B: R.12, Q.13, Y.16, T.17, A.20, M.23, Y.61, K.72, S.74, R.75, L.76, F.94, C.124, C.127, H.128, R.132 17 PLIP interactions: 17 interactions with chain B, Hydrophobic interactions: B:Y.16, B:Y.16, B:Y.16, B:A.20, B:L.76, B:F.94, B:F.94, B:R.132 Hydrogen bonds: B:Q.13, B:T.17, B:T.17, B:R.75 Salt bridges: B:R.12, B:K.72 pi-Stacking: B:Y.16 pi-Cation interactions: B:R.132 Metal complexes: B:H.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujii, S. et al., Structural and functional insights into thermally stable cytochrome c' from a thermophile. Protein Sci. (2017)

Release Date

2017-03-01

Peptides

Cytochrome c prime: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Cytochrome c prime

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