SMTL ID : 5b4a.1 (1 other biounit)

Crystal structure of LpxH with lipid X in spacegroup P21

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x LP5: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE(Non-covalent)

LP5.1: 22 residues within 4Å: Chain A: W.46, I.47, N.79, R.80, F.82, L.83, D.122, A.124, Y.125, L.128, L.141, R.149, A.153, K.155, L.156, R.157, E.159, S.160, Q.163, T.164, K.167, H.195 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:I.47, A:F.82, A:L.83, A:L.128, A:L.141, A:L.141, A:R.149, A:R.149, A:A.153, A:L.156, A:L.156, A:L.156, A:E.159, A:E.159 Hydrogen bonds: A:N.79, A:D.122, A:R.157, A:S.160, A:S.160, A:S.160, A:T.164, A:T.164, A:K.167, A:K.167, A:K.167, A:I.172 Water bridges: A:R.80 Salt bridges: A:R.80, A:R.157, A:K.167, A:H.195

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: E.44, A.45, H.150, A.153, R.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.44, A:H.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okada, C. et al., Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa. Sci Rep (2016)

Release Date

2016-09-28

Peptides

UDP-2,3-diacylglucosamine hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-2,3-diacylglucosamine hydrolase

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