- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
ANP.3: 16 residues within 4Å:- Chain A: A.53, V.54, S.55, G.57, K.58, D.59, S.60, L.77, H.78, I.79, L.81, K.137, T.155, G.156, H.157, D.161
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:S.55, A:G.57, A:G.57, A:D.59, A:D.59, A:S.60, A:I.79, A:I.79, A:G.156, A:G.156
- Water bridges: A:K.58, A:K.58
- Salt bridges: A:K.137
ANP.14: 16 residues within 4Å:- Chain B: A.53, V.54, S.55, G.57, K.58, D.59, S.60, L.77, H.78, I.79, L.81, K.137, T.155, G.156, H.157, D.161
13 PLIP interactions:13 interactions with chain B- Hydrogen bonds: B:S.55, B:G.57, B:G.57, B:D.59, B:S.60, B:H.78, B:I.79, B:I.79, B:G.156, B:G.156
- Water bridges: B:K.58, B:K.58
- Salt bridges: B:K.137
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.4: 7 residues within 4Å:- Chain A: L.81, I.83, C.130, C.133, K.137, C.222, N.224
3 PLIP interactions:3 interactions with chain A,- Metal complexes: A:C.130, A:C.133, A:C.222
SF4.15: 7 residues within 4Å:- Chain B: L.81, I.83, C.130, C.133, K.137, C.222, N.224
3 PLIP interactions:3 interactions with chain B,- Metal complexes: B:C.130, B:C.133, B:C.222
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: V.2, K.9, A.10
- Ligands: SO4.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.2, A:V.2, A:A.10
SO4.6: 2 residues within 4Å:- Chain A: V.2
- Ligands: SO4.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.2, A:V.2
SO4.7: 3 residues within 4Å:- Chain A: Q.8, K.9
- Ligands: IPA.11
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.8, A:K.9
SO4.8: 4 residues within 4Å:- Chain A: S.202, R.204, E.241, K.248
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.202, A:R.204, A:E.241
- Water bridges: A:S.16
- Salt bridges: A:K.248
SO4.9: 5 residues within 4Å:- Chain A: R.138, H.157, Q.181, R.194, K.196
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.181
- Water bridges: A:R.138
- Salt bridges: A:R.138, A:H.157, A:R.194, A:K.196
SO4.10: 5 residues within 4Å:- Chain A: T.281, T.282, C.286, A.287, R.290
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.281, A:T.281, A:T.282, A:A.287, A:R.290
SO4.16: 4 residues within 4Å:- Chain B: V.2, K.9, A.10
- Ligands: SO4.17
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.2, B:V.2, B:A.10
SO4.17: 2 residues within 4Å:- Chain B: V.2
- Ligands: SO4.16
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.2, B:V.2
SO4.18: 3 residues within 4Å:- Chain B: Q.8, K.9
- Ligands: IPA.22
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.8, B:K.9
SO4.19: 4 residues within 4Å:- Chain B: S.202, R.204, E.241, K.248
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.202, B:R.204, B:E.241, B:E.241
- Water bridges: B:S.16
- Salt bridges: B:K.248
SO4.20: 5 residues within 4Å:- Chain B: R.138, H.157, Q.181, R.194, K.196
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Q.181
- Water bridges: B:R.138
- Salt bridges: B:R.138, B:H.157, B:R.194, B:K.196
SO4.21: 5 residues within 4Å:- Chain B: T.281, T.282, C.286, A.287, R.290
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.281, B:T.282, B:A.287, B:R.290
- 2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, M. et al., Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-05-03
- Peptides
- Sulfur Transferase TtuA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, M. et al., Biochemical and structural characterization of oxygen-sensitive 2-thiouridine synthesis catalyzed by an iron-sulfur protein TtuA. Proc. Natl. Acad. Sci. U.S.A. (2017)
- Release Date
- 2017-05-03
- Peptides
- Sulfur Transferase TtuA: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A