SMTL ID : 5b4w.1 (5 other biounits)

Crystal structure of Plexin inhibitor complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: D.340, D.343, R.344, N.347, R.350, P.389 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.343 Hydrogen bonds: A:N.347, A:R.350, A:R.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsunaga, Y. et al., Allosteric Inhibition of a Semaphorin 4D Receptor Plexin B1 by a High-Affinity Macrocyclic Peptide. Cell Chem Biol (2016)

Release Date

2016-12-28

Peptides

Plexin-B1: A
Synthesized cyclic peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

Plexin-B1

Synthesized cyclic peptide

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