SMTL ID : 5b68.1

Crystal structure of apo amylomaltase from Corynebacterium glutamicum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 8 residues within 4Å: Chain A: Y.235, V.389, W.425, D.460, E.508, H.560, D.561 Ligands: SO4.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.508, A:E.508, A:H.560 Salt bridges: A:D.460, A:D.561

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: R.240, G.390, V.391, D.397, L.401, L.405, P.428, P.429, W.430, L.446 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.240, A:D.397, A:D.397, A:W.430 Water bridges: A:R.240, A:V.391 GOL.3: 4 residues within 4Å: Chain A: D.252, P.254, E.365, Q.366 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.366

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: N.661, P.663, G.664, T.665 Ligands: BTB.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.661, A:G.664, A:T.665 SO4.5: 3 residues within 4Å: Chain A: R.319, R.448, R.452 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.448, A:R.452 SO4.6: 5 residues within 4Å: Chain A: N.45, R.59, Q.60, L.63, R.67 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.45, A:Q.60 Salt bridges: A:R.59, A:R.67 SO4.7: 3 residues within 4Å: Chain A: K.171, R.177, S.380 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.171, A:R.177 SO4.8: 2 residues within 4Å: Chain A: P.538, R.544 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.544 SO4.9: 1 residues within 4Å: Chain A: S.539 No protein-ligand interaction detected (PLIP) SO4.10: 1 residues within 4Å: Chain A: R.444 3 PLIP interactions: 3 interactions with chain A Water bridges: A:W.143, A:R.444 Salt bridges: A:R.444 SO4.11: 2 residues within 4Å: Chain A: R.109, D.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.110, A:D.110 Salt bridges: A:R.109 SO4.12: 4 residues within 4Å: Chain A: S.95, N.151, E.152, R.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.151, A:E.152 Salt bridges: A:R.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joo, S. et al., Crystal Structure of Amylomaltase from Corynebacterium glutamicum. J.Agric.Food Chem. (2016)

Release Date

2016-08-03

Peptides

4-alpha-glucanotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-alpha-glucanotransferase

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