SMTL ID : 5b6t.1 (1 other biounit)

Catalytic domain of Coprinopsis cinerea GH62 alpha-L-arabinofuranosidase complexed with Pb

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x PB: LEAD (II) ION(Non-covalent)

PB.1: 3 residues within 4Å: Chain A: E.195, Y.299 Ligands: GOL.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.195, A:E.195, H2O.5, H2O.7

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: P.84, H.265 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:H.265, H2O.1, H2O.3, H2O.8, H2O.10, H2O.11

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 10 residues within 4Å: Chain A: K.27, D.28, Y.50, A.83, Q.100, V.142, D.143, E.195, Y.299 Ligands: PB.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.27, A:Y.50, A:Y.50, A:Q.100, A:D.143 GOL.4: 4 residues within 4Å: Chain A: F.68, Y.69, Y.70, Q.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.70 Water bridges: A:F.68, A:F.68 GOL.5: 6 residues within 4Å: Chain A: Y.54, I.55, S.56, S.67, F.68, Y.69 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.56, A:S.56 Water bridges: A:R.37, A:S.56, A:S.67, A:F.68 GOL.6: 2 residues within 4Å: Chain A: R.133, N.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.133, A:N.134, A:N.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tonozuka, T. et al., Structure of the Catalytic Domain of alpha-L-Arabinofuranosidase from Coprinopsis cinerea, CcAbf62A, Provides Insights into Structure-Function Relationships in Glycoside Hydrolase Family 62. Appl. Biochem. Biotechnol. (2017)

Release Date

2016-09-07

Peptides

Glycosyl hydrolase family 62 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase family 62 protein

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