SMTL ID : 5bk3.3 (3 other biounits)

Crystal structure of the neutralizing anti-circumsporozoite protein 580 antibody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 6 residues within 4Å: Chain A: N.35, R.36, T.37, W.56, S.58, T.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.35, A:T.37

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: F.31, Y.38, Y.98 Ligands: SO4.6 No protein-ligand interaction detected (PLIP) GOL.3: 3 residues within 4Å: Chain A: P.65, D.66, R.67 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.66, A:D.66, A:D.66, A:R.67 GOL.4: 3 residues within 4Å: Chain A: P.8, D.9, S.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.9, A:S.10, A:S.10 GOL.7: 4 residues within 4Å: Chain B: F.27, I.28, H.31, Y.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.28, B:H.31 GOL.8: 6 residues within 4Å: Chain B: E.6, S.7, G.8, G.9, T.119 Ligands: SO4.10 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.8, B:G.9, B:T.119 GOL.9: 3 residues within 4Å: Chain B: R.19, S.21, R.76 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.19, B:S.21, B:S.21, B:R.76, B:R.76

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: K.45, Q.48, K.51 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.45, A:K.51 SO4.6: 5 residues within 4Å: Chain A: S.99, S.100 Chain B: P.106, R.109 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.100 SO4.10: 5 residues within 4Å: Chain B: G.118, T.119, L.120, P.161 Ligands: GOL.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.118, B:L.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Triller, G. et al., Natural Parasite Exposure Induces Protective Human Anti-Malarial Antibodies. Immunity (2017)

Release Date

2017-12-13

Peptides

580 Antibody, light chain: A
580 Antibody, heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

580 Antibody, light chain

580 Antibody, heavy chain

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