SMTL ID : 5bk7.1 (3 other biounits)

The structure of MppP E15A mutant soaked with the substrate L-arginine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x EQJ: (E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-arginine(Non-covalent)

EQJ.1: 24 residues within 4Å: Chain A: T.12, D.27, G.28, H.29, S.89, S.90, S.91, F.115, N.117, I.118, T.156, N.160, D.188, S.190, F.191, D.218, K.221, K.229, R.352 Chain B: S.248, D.249, I.250, L.251, L.252 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.115, A:T.156 Hydrogen bonds: A:T.12, A:T.12, A:G.28, A:S.89, A:S.89, A:S.90, A:S.90, A:S.91, A:S.91, A:N.117, A:N.160, B:I.250 Salt bridges: A:H.29, A:K.221, A:K.229, A:R.352 EQJ.2: 25 residues within 4Å: Chain A: Y.88, S.248, D.249, I.250, L.251, L.252 Chain B: T.12, D.27, G.28, H.29, S.89, S.90, S.91, F.115, N.117, I.118, T.156, N.160, D.188, S.190, F.191, D.218, K.221, K.229, R.352 22 PLIP interactions: 18 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.115, B:T.156 Hydrogen bonds: B:T.12, B:G.28, B:S.90, B:S.90, B:S.91, B:S.91, B:N.117, B:N.160, B:D.218, B:K.221, A:D.249, A:I.250 Water bridges: B:H.29, B:H.29, A:Y.88, A:Y.88 Salt bridges: B:H.29, B:K.221, B:K.229, B:R.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, L. et al., Streptomyces wadayamensis MppP is a PLP-Dependent Oxidase, Not an Oxygenase. Biochemistry (2018)

Release Date

2018-09-05

Peptides

PLP-Dependent L-Arginine Hydroxylase MppP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PLP-Dependent L-Arginine Hydroxylase MppP

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