SMTL ID : 5bk9.1

AAD-1 Bound to the Vanadyl Ion and Succinate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

homo-dimer

Ligands

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.1: 11 residues within 4Å: Chain A: I.95, G.107, H.111, D.113, T.138, W.263, H.270, A.272, R.281, R.285 Ligands: VVO.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.272 Hydrogen bonds: A:R.285 Salt bridges: A:H.111, A:H.270, A:R.281

2 x VVO: oxovanadium(2+)(Non-covalent)

VVO.2: 4 residues within 4Å: Chain A: H.111, D.113, H.270 Ligands: SIN.1 No protein-ligand interaction detected (PLIP) VVO.5: 3 residues within 4Å: Chain B: H.111, D.113, H.270 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: R.224, I.225, E.226, G.227, M.228 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.227, A:M.228 Water bridges: A:R.224, A:E.226 Salt bridges: A:R.224 PO4.4: 2 residues within 4Å: Chain A: W.110, R.271 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.245, A:T.245, A:R.271 Salt bridges: A:R.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chekan, J.R. et al., Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-06-12

Peptides

(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

(R)-phenoxypropionate/alpha-ketoglutarate-dioxygenase

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