- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-octamer
- Ligands
- 12 x CD: CADMIUM ION(Non-covalent)
- 4 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)
PGW.2: 8 residues within 4Å:- Chain A: A.20, A.90, L.94, F.97
- Chain B: V.81, F.87, A.88, V.91
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:A.90, A:L.94, A:F.97, B:V.81, B:A.88, B:V.91
- Salt bridges: A:R.93
PGW.9: 8 residues within 4Å:- Chain B: A.20, A.90, L.94, F.97
- Chain C: V.81, F.87, A.88, V.91
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:A.90, B:L.94, B:F.97, C:V.81, C:A.88, C:V.91
- Salt bridges: B:R.93
PGW.11: 8 residues within 4Å:- Chain C: A.20, A.90, L.94, F.97
- Chain D: V.81, F.87, A.88, V.91
7 PLIP interactions:4 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:A.90, C:L.94, C:F.97, D:V.81, D:A.88, D:V.91
- Salt bridges: C:R.93
PGW.13: 8 residues within 4Å:- Chain A: V.81, F.87, A.88, V.91
- Chain D: A.20, A.90, L.94, F.97
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: A:V.81, A:A.88, A:V.91, D:A.90, D:L.94, D:F.97
- Salt bridges: D:R.93
- 5 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
K.3: 5 residues within 4Å:- Chain A: T.59
- Chain B: T.59
- Chain C: T.59
- Chain D: T.59
- Ligands: K.4
5 PLIP interactions:1 interactions with chain C, 1 interactions with chain B, 2 interactions with chain A, 1 interactions with chain D- Metal complexes: C:T.59, B:T.59, A:T.59, A:T.59, D:T.59
K.4: 10 residues within 4Å:- Chain A: T.59, V.60
- Chain B: T.59, V.60
- Chain C: T.59, V.60
- Chain D: T.59, V.60
- Ligands: K.3, K.5
5 PLIP interactions:2 interactions with chain C, 1 interactions with chain D, 1 interactions with chain B, 1 interactions with chain A- Metal complexes: C:T.59, C:V.60, D:V.60, B:V.60, A:V.60
K.5: 10 residues within 4Å:- Chain A: V.60, G.61
- Chain B: V.60, G.61
- Chain C: V.60, G.61
- Chain D: V.60, G.61
- Ligands: K.4, K.6
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain D- Metal complexes: B:V.60, B:G.61, C:G.61, A:G.61, D:G.61
K.6: 9 residues within 4Å:- Chain A: G.61, Y.62
- Chain B: G.61, Y.62
- Chain C: G.61, Y.62
- Chain D: G.61, Y.62
- Ligands: K.5
4 PLIP interactions:1 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain A- Metal complexes: C:Y.62, B:Y.62, D:Y.62, A:Y.62
K.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fan, C. et al., Calcium-gated potassium channel blockade via membrane-facing fenestrations. Nat.Chem.Biol. (2023)
- Release Date
- 2022-09-21
- Peptides
- Calcium-gated potassium channel MthK: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
GE
BF
DG
FH
H - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-octamer
- Ligands
- 12 x CD: CADMIUM ION(Non-covalent)
- 4 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-covalent)
- 5 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fan, C. et al., Calcium-gated potassium channel blockade via membrane-facing fenestrations. Nat.Chem.Biol. (2023)
- Release Date
- 2022-09-21
- Peptides
- Calcium-gated potassium channel MthK: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
ED
GE
BF
DG
FH
H - Membrane
-
We predict this structure to be a membrane protein.