- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.00 Å
- Oligo State
- homo-20-mer
- Ligands
- 3 x A- A- A- A- A- A- A: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3')(Non-covalent)
- 1 x A- A- A- A- A: RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3')(Non-covalent)
- 1 x A- A- A- A- A- A- A- A: RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')(Non-covalent)
A-A-A-A-A-A-A-A.4: 24 residues within 4Å:- Chain D: N.16, S.17, N.18, V.19, T.21, M.22
- Chain G: I.23, P.35, T.36, W.37, V.38
- Chain T: W.37, V.38, R.39, A.40, M.76, R.79, S.155
- Ligands: U-U-U-U-U-U-U-U.10, U-U-U-U-U-U-U-U.10, U-U-U-U-U-U-U-U.10, U-U-U-U-U-U-U-U.10, U-U-U-U-U-U-U-U.10, U-U-U-U-U-U-U-U.10
5 PLIP interactions:4 interactions with chain G, 1 interactions with chain S- Hydrogen bonds: G:N.16, G:S.17, G:N.18
- Water bridges: G:T.21
- Salt bridges: S:R.79
- 1 x U- U- U- U- U- U: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3')(Non-covalent)
- 2 x U- U- U- U- U: RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')(Non-covalent)
U-U-U-U-U.7: 23 residues within 4Å:- Chain E: W.37, V.38, R.39, A.40, M.76, R.79, S.155
- Chain F: P.35, T.36, W.37, V.38
- Chain O: T.13, G.14, N.16, S.17, N.18, V.19, T.21, M.22
- Ligands: A-A-A-A-A.3, A-A-A-A-A.3, A-A-A-A-A.3, A-A-A-A-A.3
Protein-ligand interaction information (PLIP) not availableU-U-U-U-U.12: 11 residues within 4Å:- Chain S: P.35, T.36, W.37, V.38
- Chain Y: A.1, A.3, A.4, A.5, A.6, A.7, A.8
Protein-ligand interaction information (PLIP) not available- 3 x U- U- U- U- U- U- U- U: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')(Non-covalent)
U-U-U-U-U-U-U-U.8: 25 residues within 4Å:- Chain I: W.37, V.38, R.39, A.40, M.76, S.77, R.79, R.125, R.131, S.155
- Chain K: N.16, S.17, N.18, V.19, T.21, M.22, R.24
- Chain P: A.1, A.2, A.3, A.4, A.5, A.6, A.7
- Chain X: A.7
Protein-ligand interaction information (PLIP) not availableU-U-U-U-U-U-U-U.10: 18 residues within 4Å:- Chain G: W.37, V.38, R.39, A.40, M.76, R.79, S.155
- Chain T: I.23, P.35, T.36, W.37, V.38
- Ligands: A-A-A-A-A-A-A-A.4, A-A-A-A-A-A-A-A.4, A-A-A-A-A-A-A-A.4, A-A-A-A-A-A-A-A.4, A-A-A-A-A-A-A-A.4, A-A-A-A-A-A-A-A.4
Protein-ligand interaction information (PLIP) not availableU-U-U-U-U-U-U-U.11: 17 residues within 4Å:- Chain H: I.23, P.35, T.36, W.37, V.38
- Chain S: D.15, N.16, S.17, N.18, V.19, T.21, M.22, R.24
- Chain X: A.2, A.3, A.4, A.5
Protein-ligand interaction information (PLIP) not available- 1 x U- U- U- U- U- U- U: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3')(Non-covalent)
- 26 x CL: CHLORIDE ION(Non-functional Binders)
CL.13: 4 residues within 4Å:- Chain A: R.95, E.108, E.110
- Chain F: P.33
Ligand excluded by PLIPCL.14: 3 residues within 4Å:- Chain A: K.54, L.99, N.139
Ligand excluded by PLIPCL.16: 10 residues within 4Å:- Chain A: N.115, N.117
- Chain B: N.115, N.117
- Chain C: N.115, N.117
- Chain D: N.115, N.117
- Chain E: N.115, N.117
Ligand excluded by PLIPCL.17: 5 residues within 4Å:- Chain A: N.117
- Chain B: N.117
- Chain C: N.117
- Chain D: N.117
- Chain E: N.117
Ligand excluded by PLIPCL.19: 4 residues within 4Å:- Chain E: F.61, T.71, V.135, A.136
Ligand excluded by PLIPCL.20: 5 residues within 4Å:- Chain E: Y.28, P.29, K.30
- Chain G: G.111, R.112
Ligand excluded by PLIPCL.21: 10 residues within 4Å:- Chain F: N.115, N.117
- Chain G: N.115, N.117
- Chain H: N.115, N.117
- Chain I: N.115, N.117
- Chain J: N.115, N.117
Ligand excluded by PLIPCL.22: 8 residues within 4Å:- Chain E: Y.28
- Chain F: P.42, F.43, E.44, A.151, L.152, V.153
- Chain G: R.112
Ligand excluded by PLIPCL.25: 2 residues within 4Å:- Chain H: A.25, G.26
Ligand excluded by PLIPCL.26: 3 residues within 4Å:- Chain H: R.125, P.127, T.128
Ligand excluded by PLIPCL.27: 3 residues within 4Å:- Chain H: T.102, Q.132
- Chain T: Q.132
Ligand excluded by PLIPCL.29: 1 residues within 4Å:- Chain I: Y.28
Ligand excluded by PLIPCL.30: 4 residues within 4Å:- Chain I: F.70, T.71, S.72, N.159
Ligand excluded by PLIPCL.31: 4 residues within 4Å:- Chain J: S.49, P.87, N.146, R.148
Ligand excluded by PLIPCL.33: 10 residues within 4Å:- Chain K: N.115, N.117
- Chain L: N.115, N.117
- Chain M: N.115, N.117
- Chain N: N.115, N.117
- Chain O: N.115, N.117
Ligand excluded by PLIPCL.38: 7 residues within 4Å:- Chain M: P.42, F.43, E.44, A.151, L.152, V.153
- Chain N: R.112
Ligand excluded by PLIPCL.39: 1 residues within 4Å:- Chain M: Y.28
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain M: K.54, L.99, N.139
Ligand excluded by PLIPCL.41: 4 residues within 4Å:- Chain M: F.70, T.71, S.72, N.159
Ligand excluded by PLIPCL.42: 2 residues within 4Å:- Chain M: N.32, P.35
Ligand excluded by PLIPCL.44: 3 residues within 4Å:- Chain O: R.95, E.108, E.110
Ligand excluded by PLIPCL.46: 4 residues within 4Å:- Chain D: V.38, C.157
- Ligands: A-A-A-A-A-A.2, A-A-A-A-A-A.2
Ligand excluded by PLIPCL.47: 6 residues within 4Å:- Chain E: S.17, N.18, V.19
- Chain K: V.38, C.157
- Ligands: U-U-U-U-U-U-U.9
Ligand excluded by PLIPCL.48: 3 residues within 4Å:- Chain S: K.54, L.99, N.139
Ligand excluded by PLIPCL.49: 10 residues within 4Å:- Chain S: N.115, N.117
- Chain T: N.115, N.117
- Chain U: N.115, N.117
- Chain V: N.115, N.117
- Chain W: N.115, N.117
Ligand excluded by PLIPCL.52: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- 14 x MG: MAGNESIUM ION(Non-covalent)
MG.15: 9 residues within 4Å:- Chain A: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain B: Y.91
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:T.82, A:L.84, A:S.92
MG.18: 10 residues within 4Å:- Chain B: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
- Chain C: Y.91
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain B- Metal complexes: C:Y.91, B:T.82, B:S.92
MG.23: 7 residues within 4Å:- Chain F: P.86, Y.91, S.92, A.113, N.115, I.116, T.118
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:S.92, F:I.116, F:T.118
MG.24: 7 residues within 4Å:- Chain G: P.86, Y.91, S.92, A.113, N.115, I.116, T.118
3 PLIP interactions:3 interactions with chain G- Metal complexes: G:S.92, G:I.116, G:T.118
MG.28: 9 residues within 4Å:- Chain H: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain I: Y.91
3 PLIP interactions:3 interactions with chain H- Metal complexes: H:T.82, H:L.84, H:S.92
MG.32: 10 residues within 4Å:- Chain F: Y.91
- Chain J: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
3 PLIP interactions:2 interactions with chain J, 1 interactions with chain F- Metal complexes: J:T.82, J:S.92, F:Y.91
MG.34: 9 residues within 4Å:- Chain K: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain L: Y.91
3 PLIP interactions:2 interactions with chain K, 1 interactions with chain L- Metal complexes: K:T.82, K:L.84, L:Y.91
MG.35: 8 residues within 4Å:- Chain J: Y.28
- Chain K: P.42, F.43, E.44, A.151, L.152, V.153
- Chain L: R.112
3 PLIP interactions:1 interactions with chain J, 2 interactions with chain K- Metal complexes: J:Y.28, K:E.44, K:L.152
MG.36: 7 residues within 4Å:- Chain K: P.86, Y.91, S.92, A.113, N.115, I.116, T.118
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:S.92, K:I.116, K:T.118
MG.37: 7 residues within 4Å:- Chain L: P.86, Y.91, S.92, A.113, N.115, I.116, T.118
3 PLIP interactions:3 interactions with chain L- Metal complexes: L:S.92, L:I.116, L:T.118
MG.43: 9 residues within 4Å:- Chain M: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
- Chain N: Y.91
4 PLIP interactions:3 interactions with chain M, 1 interactions with chain N- Metal complexes: M:T.82, M:L.84, M:S.92, N:Y.91
MG.45: 9 residues within 4Å:- Chain K: Y.91
- Chain O: T.82, L.84, T.85, P.86, S.92, R.119, A.120, C.147
4 PLIP interactions:3 interactions with chain O, 1 interactions with chain K- Metal complexes: O:T.82, O:L.84, O:S.92, K:Y.91
MG.50: 8 residues within 4Å:- Chain U: T.82, L.84, T.85, P.86, S.92, R.119, C.147
- Chain V: Y.91
4 PLIP interactions:3 interactions with chain U, 1 interactions with chain V- Metal complexes: U:T.82, U:L.84, U:S.92, V:Y.91
MG.51: 10 residues within 4Å:- Chain V: T.82, L.84, T.85, P.86, S.92, T.118, R.119, A.120, C.147
- Chain W: Y.91
3 PLIP interactions:2 interactions with chain V, 1 interactions with chain W- Metal complexes: V:T.82, V:S.92, W:Y.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson, A., Structures of additional crystal forms of Satellite tobacco mosaic virus grown from a variety of salts. Acta Crystallogr.,Sect.F (2021)
- Release Date
- 2021-12-15
- Peptides
- Coat protein: ABCDEFGHIJKLMNOSTUVW
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OS
GGT
HHU
IIV
JJW
KK
SMTL ID : 5bkn.1
Crystallographic structure of a cubic crystal form of STMV (84.5 degree rotation) grown from chloride
Coat protein
Toggle Identical (ABDEFIJMNTUVW) Toggle Identical (HKS)Related Entries With Identical Sequence
1a34.1 | 1a34.2 | 1a34.3 | 1a34.4 | 1a34.5 | 4nia.1 | 4oq8.1 | 4oq8.2 | 4oq8.3 | 4oq8.4 | 4oq8.5 | 4oq9.1 | 4oq9.2 | 4oq9.3 | 5bkl.1 | 5bkq.1 | 7m2t.1 | 7m2t.2 | 7m2t.3 | 7m2t.4 | 7m2t.5 | 7m2t.6 | 7m2t.7 | 7m2t.8 | 7m2t.9 | 7m2t.10 | 7m2t.11 | 7m2t.12 | 7m2t.13 | 7m2t.14 more...less...7m2t.15 | 7m2t.16 | 7m2t.17 | 7m2t.18 | 7m2t.19 | 7m2t.20 | 7m2t.21 | 7m2t.22 | 7m2t.23 | 7m2t.24 | 7m2t.25 | 7m2t.26 | 7m2t.27 | 7m2t.28 | 7m2t.29 | 7m2t.30 | 7m2v.1 | 7m3r.1 | 7m3t.1 | 7m50.1 | 7m54.1 | 7m57.1 | 7m57.2 | 7m57.3 | 7m57.4 | 7m57.5 | 7m57.6 | 7m57.7 | 7m57.8 | 7m57.9 | 7m57.10 | 7m57.11 | 7m57.12 | 7m57.13 | 7m57.14 | 7m57.15 | 7m57.16 | 7m57.17 | 7m57.18 | 7m57.19 | 7m57.20 | 7m57.21 | 7m57.22 | 7m57.23 | 7m57.24 | 7m57.25 | 7m57.26 | 7m57.27 | 7m57.28 | 7m57.29 | 7m57.30