- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 24 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
DIO.2: 5 residues within 4Å:- Chain A: F.449
- Chain D: H.310, S.311, N.313
- Ligands: GOL.6
Ligand excluded by PLIPDIO.3: 7 residues within 4Å:- Chain A: F.140, D.269, T.272, K.274, P.275, Y.278, R.279
Ligand excluded by PLIPDIO.4: 5 residues within 4Å:- Chain A: D.405, K.407, L.408, N.418, Y.419
Ligand excluded by PLIPDIO.5: 7 residues within 4Å:- Chain A: Q.392, I.421
- Chain D: P.136, P.283, G.284, N.285, Q.307
Ligand excluded by PLIPDIO.11: 2 residues within 4Å:- Chain B: S.333, K.334
Ligand excluded by PLIPDIO.12: 5 residues within 4Å:- Chain B: Y.112, G.331, M.332, S.333, H.336
Ligand excluded by PLIPDIO.13: 4 residues within 4Å:- Chain B: S.66, E.67, Y.212, K.217
Ligand excluded by PLIPDIO.14: 1 residues within 4Å:- Chain B: K.243
Ligand excluded by PLIPDIO.24: 5 residues within 4Å:- Chain C: F.449
- Chain F: H.310, S.311, N.313
- Ligands: GOL.28
Ligand excluded by PLIPDIO.25: 7 residues within 4Å:- Chain C: F.140, D.269, T.272, K.274, P.275, Y.278, R.279
Ligand excluded by PLIPDIO.26: 5 residues within 4Å:- Chain C: D.405, K.407, L.408, N.418, Y.419
Ligand excluded by PLIPDIO.27: 7 residues within 4Å:- Chain C: Q.392, I.421
- Chain F: P.136, P.283, G.284, N.285, Q.307
Ligand excluded by PLIPDIO.33: 2 residues within 4Å:- Chain D: S.333, K.334
Ligand excluded by PLIPDIO.34: 5 residues within 4Å:- Chain D: Y.112, G.331, M.332, S.333, H.336
Ligand excluded by PLIPDIO.35: 4 residues within 4Å:- Chain D: S.66, E.67, Y.212, K.217
Ligand excluded by PLIPDIO.36: 1 residues within 4Å:- Chain D: K.243
Ligand excluded by PLIPDIO.46: 5 residues within 4Å:- Chain B: H.310, S.311, N.313
- Chain E: F.449
- Ligands: GOL.50
Ligand excluded by PLIPDIO.47: 7 residues within 4Å:- Chain E: F.140, D.269, T.272, K.274, P.275, Y.278, R.279
Ligand excluded by PLIPDIO.48: 5 residues within 4Å:- Chain E: D.405, K.407, L.408, N.418, Y.419
Ligand excluded by PLIPDIO.49: 7 residues within 4Å:- Chain B: P.136, P.283, G.284, N.285, Q.307
- Chain E: Q.392, I.421
Ligand excluded by PLIPDIO.55: 2 residues within 4Å:- Chain F: S.333, K.334
Ligand excluded by PLIPDIO.56: 5 residues within 4Å:- Chain F: Y.112, G.331, M.332, S.333, H.336
Ligand excluded by PLIPDIO.57: 4 residues within 4Å:- Chain F: S.66, E.67, Y.212, K.217
Ligand excluded by PLIPDIO.58: 1 residues within 4Å:- Chain F: K.243
Ligand excluded by PLIP- 21 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 8 residues within 4Å:- Chain A: F.211, S.422, Y.423, T.424, R.445, F.449
- Chain D: H.310
- Ligands: DIO.2
Ligand excluded by PLIPGOL.7: 7 residues within 4Å:- Chain A: F.225, G.226, A.409, R.412, Y.414
- Chain B: L.321
- Ligands: ADP.1
Ligand excluded by PLIPGOL.8: 7 residues within 4Å:- Chain A: N.197, Y.198, K.215, S.314, R.362, G.371, S.372
Ligand excluded by PLIPGOL.15: 6 residues within 4Å:- Chain A: R.412
- Chain B: A.121, H.122, L.324, S.325, I.344
Ligand excluded by PLIPGOL.16: 2 residues within 4Å:- Chain B: S.366, K.367
Ligand excluded by PLIPGOL.17: 5 residues within 4Å:- Chain B: R.249, D.286, T.288, H.289, V.290
Ligand excluded by PLIPGOL.18: 7 residues within 4Å:- Chain A: N.288
- Chain B: N.95, G.96, L.97, A.98, S.261, R.265
Ligand excluded by PLIPGOL.28: 8 residues within 4Å:- Chain C: F.211, S.422, Y.423, T.424, R.445, F.449
- Chain F: H.310
- Ligands: DIO.24
Ligand excluded by PLIPGOL.29: 7 residues within 4Å:- Chain C: F.225, G.226, A.409, R.412, Y.414
- Chain D: L.321
- Ligands: ADP.23
Ligand excluded by PLIPGOL.30: 7 residues within 4Å:- Chain C: N.197, Y.198, K.215, S.314, R.362, G.371, S.372
Ligand excluded by PLIPGOL.37: 6 residues within 4Å:- Chain C: R.412
- Chain D: A.121, H.122, L.324, S.325, I.344
Ligand excluded by PLIPGOL.38: 2 residues within 4Å:- Chain D: S.366, K.367
Ligand excluded by PLIPGOL.39: 5 residues within 4Å:- Chain D: R.249, D.286, T.288, H.289, V.290
Ligand excluded by PLIPGOL.40: 7 residues within 4Å:- Chain C: N.288
- Chain D: N.95, G.96, L.97, A.98, S.261, R.265
Ligand excluded by PLIPGOL.50: 8 residues within 4Å:- Chain B: H.310
- Chain E: F.211, S.422, Y.423, T.424, R.445, F.449
- Ligands: DIO.46
Ligand excluded by PLIPGOL.51: 7 residues within 4Å:- Chain E: F.225, G.226, A.409, R.412, Y.414
- Chain F: L.321
- Ligands: ADP.45
Ligand excluded by PLIPGOL.52: 7 residues within 4Å:- Chain E: N.197, Y.198, K.215, S.314, R.362, G.371, S.372
Ligand excluded by PLIPGOL.59: 6 residues within 4Å:- Chain E: R.412
- Chain F: A.121, H.122, L.324, S.325, I.344
Ligand excluded by PLIPGOL.60: 2 residues within 4Å:- Chain F: S.366, K.367
Ligand excluded by PLIPGOL.61: 5 residues within 4Å:- Chain F: R.249, D.286, T.288, H.289, V.290
Ligand excluded by PLIPGOL.62: 7 residues within 4Å:- Chain E: N.288
- Chain F: N.95, G.96, L.97, A.98, S.261, R.265
Ligand excluded by PLIP- 15 x MG: MAGNESIUM ION(Non-covalent)
MG.9: 5 residues within 4Å:- Chain A: T.230, E.252, R.253, E.256
- Ligands: ADP.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:T.230, H2O.2, H2O.2, H2O.3, H2O.6
MG.10: 5 residues within 4Å:- Chain A: G.216, V.315, S.372, L.373, T.374
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:V.315, A:S.372, A:T.374
MG.19: 1 residues within 4Å:- Chain B: D.90
No protein-ligand interaction detected (PLIP)MG.20: 1 residues within 4Å:- Chain B: Y.102
No protein-ligand interaction detected (PLIP)MG.21: 2 residues within 4Å:- Chain B: R.92, D.93
No protein-ligand interaction detected (PLIP)MG.31: 5 residues within 4Å:- Chain C: T.230, E.252, R.253, E.256
- Ligands: ADP.23
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:T.230, H2O.18, H2O.19, H2O.19, H2O.23
MG.32: 5 residues within 4Å:- Chain C: G.216, V.315, S.372, L.373, T.374
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:V.315, C:S.372, C:T.374
MG.41: 1 residues within 4Å:- Chain D: D.90
No protein-ligand interaction detected (PLIP)MG.42: 1 residues within 4Å:- Chain D: Y.102
No protein-ligand interaction detected (PLIP)MG.43: 2 residues within 4Å:- Chain D: R.92, D.93
No protein-ligand interaction detected (PLIP)MG.53: 5 residues within 4Å:- Chain E: T.230, E.252, R.253, E.256
- Ligands: ADP.45
5 PLIP interactions:1 interactions with chain E, 4 Ligand-Water interactions- Metal complexes: E:T.230, H2O.34, H2O.35, H2O.35, H2O.39
MG.54: 5 residues within 4Å:- Chain E: G.216, V.315, S.372, L.373, T.374
3 PLIP interactions:3 interactions with chain E- Metal complexes: E:V.315, E:S.372, E:T.374
MG.63: 1 residues within 4Å:- Chain F: D.90
No protein-ligand interaction detected (PLIP)MG.64: 1 residues within 4Å:- Chain F: Y.102
No protein-ligand interaction detected (PLIP)MG.65: 2 residues within 4Å:- Chain F: R.92, D.93
No protein-ligand interaction detected (PLIP)- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.22: 4 residues within 4Å:- Chain B: S.306, Q.307, D.308, K.322
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Q.307, B:D.308
- Water bridges: B:S.306, B:D.308, B:K.322
- Salt bridges: B:K.322
SO4.44: 4 residues within 4Å:- Chain D: S.306, Q.307, D.308, K.322
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:Q.307, D:D.308
- Water bridges: D:S.306, D:D.308, D:K.322
- Salt bridges: D:K.322
SO4.66: 4 residues within 4Å:- Chain F: S.306, Q.307, D.308, K.322
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:Q.307, F:D.308
- Water bridges: F:S.306, F:D.308, F:K.322
- Salt bridges: F:K.322
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mohanty, S. et al., Structural Basis for a Unique ATP Synthase Core Complex from Nanoarcheaum equitans. J.Biol.Chem. (2015)
- Release Date
- 2015-09-16
- Peptides
- V-type ATP synthase alpha chain: ACE
NEQ263: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 24 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)
- 21 x GOL: GLYCEROL(Non-functional Binders)
- 15 x MG: MAGNESIUM ION(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mohanty, S. et al., Structural Basis for a Unique ATP Synthase Core Complex from Nanoarcheaum equitans. J.Biol.Chem. (2015)
- Release Date
- 2015-09-16
- Peptides
- V-type ATP synthase alpha chain: ACE
NEQ263: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B