SMTL ID : 5boz.3 (5 other biounits)

Ricin A chain bound to camelid nanobody (VHH9)(E1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.116, G.117, N.119, R.122 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.115, A:G.117, A:N.119, A:N.119 Salt bridges: A:R.122 SO4.2: 2 residues within 4Å: Chain A: R.122, Q.125 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.122 SO4.3: 1 residues within 4Å: Chain A: Y.112 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.112 SO4.4: 3 residues within 4Å: Chain B: S.9, G.10, T.122 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Structural Analysis of Single Domain Antibodies Bound to a Second Neutralizing Hot Spot on Ricin Toxin's Enzymatic Subunit. J. Biol. Chem. (2017)

Release Date

2016-12-07

Peptides

Ricin: A
VHH single chain antibody E1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
I

Ricin

VHH single chain antibody E1

Related Entries With Identical Sequence