SMTL ID : 5bq5.1 (2 other biounits)

Crystal structure of the IstB AAA+ domain bound to ADP-BeF3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: K.9, T.13, F.14, D.15, A.18, Q.19, P.48, G.49, I.50, G.51, K.52, T.53, H.54, Y.111, Y.177, R.178 Ligands: MG.2, BEF.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:K.9, A:D.15, A:D.15, A:G.49, A:I.50, A:G.51, A:K.52, A:T.53, A:H.54 Water bridges: A:Q.19, A:K.52, A:K.52, A:Y.177, A:R.178, A:R.178, A:R.178 Salt bridges: A:K.52, A:R.178, A:R.178 pi-Stacking: A:H.54, A:Y.177, A:Y.177

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.53, E.108, R.178 Ligands: ADP.1, BEF.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.53, H2O.1, H2O.3, H2O.4

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.3: 10 residues within 4Å: Chain A: P.48, G.49, K.52, T.53, E.108, Y.111, N.140, R.178 Ligands: ADP.1, MG.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arias-Palomo, E. et al., An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment. Cell (2015)

Release Date

2015-09-02

Peptides

Insertion sequence IS5376 putative ATP-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Insertion sequence IS5376 putative ATP-binding protein

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